Wall clock time and date at job start Mon Mar 30 2020 01:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 117.00043 * 2 1 4 4 C 1.39151 * 120.34544 * 359.97438 * 3 2 1 5 5 N 1.32015 * 121.23650 * 180.02562 * 4 3 2 6 6 C 1.31482 * 122.03570 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.73778 * 180.27588 * 6 5 4 8 8 C 1.40750 * 120.52689 * 0.02562 * 6 5 4 9 9 C 1.41415 * 120.63251 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99765 * 334.94433 * 9 8 6 11 11 C 1.39942 * 120.00049 * 154.95088 * 9 8 6 12 12 N 1.30827 * 119.99967 * 344.21333 * 11 9 8 13 13 Si 1.86805 * 119.99884 * 164.20921 * 11 9 8 14 14 H 1.48500 * 109.47074 * 90.00127 * 13 11 9 15 15 H 1.48497 * 109.46721 * 209.99718 * 13 11 9 16 16 H 1.48499 * 109.47095 * 330.00183 * 13 11 9 17 17 C 1.38486 * 120.34170 * 180.02562 * 3 2 1 18 18 H 1.08994 * 109.47008 * 59.99969 * 1 2 3 19 19 H 1.08998 * 109.47215 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46913 * 300.00271 * 1 2 3 21 21 H 1.07997 * 119.38144 * 0.04570 * 4 3 2 22 22 H 1.09001 * 109.47135 * 269.72933 * 7 6 5 23 23 H 1.09007 * 109.46722 * 29.73184 * 7 6 5 24 24 H 1.09003 * 109.47344 * 149.72434 * 7 6 5 25 25 H 0.96998 * 120.00020 * 180.02562 * 12 11 9 26 26 H 1.07997 * 120.92522 * 359.97438 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2952 2.3826 -0.0005 5 7 1.8762 3.5680 -0.0011 6 6 3.1840 3.7038 -0.0006 7 6 3.7924 5.0825 0.0051 8 6 4.0203 2.5717 0.0000 9 6 5.4272 2.7151 -0.0001 10 1 5.8784 3.6126 -0.3966 11 6 6.2346 1.6940 0.5135 12 7 5.7096 0.7597 1.2639 13 14 8.0621 1.6650 0.1276 14 1 8.7993 2.4305 1.1649 15 1 8.5429 0.2601 0.1142 16 1 8.2970 2.2815 -1.2028 17 6 3.4286 1.2917 -0.0005 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 0.2170 2.3209 -0.0002 22 1 3.9435 5.4172 -1.0212 23 1 3.1227 5.7730 0.5177 24 1 4.7511 5.0545 0.5230 25 1 6.2693 0.0522 1.6202 26 1 4.0366 0.3992 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306915548.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:40 Heat of formation + Delta-G solvation = -23.741581 kcal Electronic energy + Delta-G solvation = -11765.816222 eV Core-core repulsion = 9616.227177 eV Total energy + Delta-G solvation = -2149.589045 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.04603 -37.01155 -34.05508 -30.94911 -30.48722 -27.39882 -25.79438 -25.11742 -21.52101 -20.32676 -17.73726 -16.22918 -15.81461 -14.92874 -14.82285 -14.34242 -13.27968 -13.08528 -12.93050 -11.85686 -11.69680 -11.51861 -11.35926 -11.31445 -10.89321 -10.82625 -10.55288 -10.31228 -9.97681 -9.38630 -8.10839 -7.88145 -7.09068 -6.80468 -4.53471 2.62673 2.94551 3.02198 3.06097 3.16721 3.84093 4.23924 4.56690 5.53649 5.63451 5.71357 5.79447 5.95578 6.31644 6.39598 6.49210 6.69664 6.82040 6.96746 7.11212 7.23070 7.55838 7.65643 7.88201 8.18037 8.57512 8.65981 8.71989 9.62036 10.05002 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.039281 B = 0.013256 C = 0.010205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.643854 B = 2111.715946 C = 2743.195098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.327 6.327 3 C 0.082 3.918 4 C -0.112 4.112 5 N -0.443 5.443 6 C -0.016 4.016 7 C -0.068 4.068 8 C 0.095 3.905 9 C -0.443 4.443 10 H 0.089 0.911 11 C 0.073 3.927 12 N -0.782 5.782 13 Si 0.913 3.087 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.258 1.258 17 C -0.171 4.171 18 H 0.046 0.954 19 H 0.085 0.915 20 H 0.046 0.954 21 H 0.122 0.878 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.284 0.716 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -0.583 -1.343 2.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.240 6.240 3 C 0.036 3.964 4 C -0.268 4.268 5 N -0.152 5.152 6 C -0.161 4.161 7 C -0.126 4.126 8 C 0.090 3.910 9 C -0.472 4.472 10 H 0.107 0.893 11 C -0.147 4.147 12 N -0.406 5.406 13 Si 0.737 3.263 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.182 1.182 17 C -0.198 4.198 18 H 0.064 0.936 19 H 0.103 0.897 20 H 0.065 0.935 21 H 0.139 0.861 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.847 -0.289 -1.195 2.219 hybrid contribution 0.965 -0.891 -0.028 1.314 sum -0.882 -1.180 -1.223 1.915 Atomic orbital electron populations 1.22787 0.80541 1.02102 1.00686 1.85991 1.19660 1.28492 1.89836 1.19952 0.93373 0.83861 0.99183 1.21736 0.97797 0.87615 1.19643 1.66648 1.12996 1.26228 1.09328 1.21026 0.88374 0.95131 1.11550 1.20216 0.99698 0.92423 1.00223 1.18105 0.94121 0.90221 0.88539 1.19591 0.90473 1.02799 1.34356 0.89347 1.26041 1.01884 0.94208 0.92543 1.69816 1.38610 1.10506 1.21676 0.86227 0.81249 0.78550 0.80298 1.19260 1.19975 1.18215 1.20981 0.89505 0.99226 1.10050 0.93553 0.89690 0.93506 0.86063 0.93493 0.93376 0.91490 0.90468 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.82 101.05 0.99 1.56 15 2 O -0.33 -7.33 10.50 -19.47 -0.20 -7.53 15 3 C 0.08 2.08 6.70 -39.15 -0.26 1.81 15 4 C -0.11 -2.73 10.22 -17.13 -0.18 -2.91 15 5 N -0.44 -11.40 10.25 -8.67 -0.09 -11.48 15 6 C -0.02 -0.42 6.85 -81.79 -0.56 -0.98 15 7 C -0.07 -1.46 9.57 36.01 0.34 -1.11 15 8 C 0.09 2.56 5.58 -106.69 -0.60 1.97 15 9 C -0.44 -11.38 8.15 -37.74 -0.31 -11.69 15 10 H 0.09 2.12 6.87 -52.48 -0.36 1.76 15 11 C 0.07 1.78 5.20 -17.34 -0.09 1.69 15 12 N -0.78 -20.00 10.92 55.55 0.61 -19.40 15 13 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 15 14 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 15 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 16 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 17 C -0.17 -4.67 8.75 -38.44 -0.34 -5.00 15 18 H 0.05 0.71 7.67 -51.93 -0.40 0.31 15 19 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 20 H 0.05 0.73 7.67 -51.93 -0.40 0.33 15 21 H 0.12 2.59 6.29 -52.49 -0.33 2.26 15 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.07 1.39 6.77 -51.93 -0.35 1.04 15 25 H 0.28 6.58 8.30 -40.82 -0.34 6.24 15 26 H 0.13 3.73 6.24 -52.49 -0.33 3.40 15 LS Contribution 227.64 15.07 3.43 3.43 Total: -1.00 -29.11 227.64 -4.85 -33.96 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -2.57 Total: 2.70 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -0.99 Total: -14.66 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.52 Total: -30.88 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.20 Total: -7.53 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.11 -4.85 -33.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306915548.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.216 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds