Wall clock time and date at job start Mon Mar 30 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35639 * 117.00245 * 2 1 4 4 C 1.38623 * 120.71352 * 0.02562 * 3 2 1 5 5 N 1.31848 * 120.74855 * 179.97438 * 4 3 2 6 6 C 1.32111 * 122.41654 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.32291 * 179.97438 * 6 5 4 8 8 C 1.36530 * 121.35005 * 359.97438 * 6 5 4 9 9 C 1.41094 * 119.05978 * 359.97438 * 8 6 5 10 10 C 1.41197 * 121.07642 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99891 * 203.42106 * 10 9 8 12 12 C 1.40057 * 119.99554 * 23.42186 * 10 9 8 13 13 N 1.30753 * 120.00440 * 17.13176 * 12 10 9 14 14 Si 1.86800 * 119.99926 * 197.12724 * 12 10 9 15 15 H 1.48499 * 109.47143 * 89.99964 * 14 12 10 16 16 H 1.48495 * 109.47308 * 210.00276 * 14 12 10 17 17 H 1.48506 * 109.47280 * 330.00011 * 14 12 10 18 18 H 1.08999 * 109.47202 * 59.99872 * 1 2 3 19 19 H 1.08997 * 109.47341 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.47262 * 299.99725 * 1 2 3 21 21 H 1.08001 * 119.62483 * 359.69889 * 4 3 2 22 22 H 1.08990 * 109.47328 * 270.01898 * 7 6 5 23 23 H 1.09000 * 109.46982 * 30.02335 * 7 6 5 24 24 H 1.09006 * 109.46679 * 150.02005 * 7 6 5 25 25 H 1.08007 * 120.47356 * 179.97438 * 8 6 5 26 26 H 0.97004 * 120.00706 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.3044 2.3805 0.0005 5 7 1.9023 3.5556 0.0010 6 6 3.2175 3.6810 0.0016 7 6 3.8274 5.0591 0.0015 8 6 4.0353 2.5878 0.0021 9 6 3.4583 1.3002 0.0027 10 6 4.2637 0.1406 0.0028 11 1 3.8667 -0.7926 -0.3686 12 6 5.5775 0.2006 0.4845 13 7 5.9552 1.2059 1.2302 14 14 6.7902 -1.1559 0.0616 15 1 7.4996 -0.8111 -1.1966 16 1 7.7763 -1.2992 1.1625 17 1 6.0587 -2.4358 -0.1174 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 0.2256 2.3304 -0.0040 22 1 3.9746 5.3913 -1.0260 23 1 3.1606 5.7516 0.5153 24 1 4.7883 5.0311 0.5155 25 1 5.1088 2.7068 0.0021 26 1 6.8652 1.2477 1.5636 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306986528.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:41 Heat of formation + Delta-G solvation = -40.320157 kcal Electronic energy + Delta-G solvation = -11799.795360 eV Core-core repulsion = 9649.487414 eV Total energy + Delta-G solvation = -2150.307946 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.84192 -38.56898 -36.06713 -32.75682 -32.46739 -28.39097 -27.79084 -27.22495 -23.45900 -22.17886 -19.30152 -18.25290 -17.71690 -16.52029 -16.33313 -16.00106 -14.84876 -14.74924 -14.64111 -14.13113 -13.37233 -13.22120 -12.99545 -12.88474 -12.79374 -12.40663 -12.05690 -11.89117 -11.81839 -11.20433 -9.94728 -9.85109 -8.95395 -8.65803 -6.46207 0.85003 0.88447 1.38224 1.52322 1.53567 2.19273 2.70628 2.84242 3.59781 3.88265 4.31874 4.39207 4.47754 4.56991 4.71699 4.74959 4.92653 5.03193 5.09325 5.26006 5.33198 5.58105 5.69062 6.13995 6.34939 6.62157 6.74863 7.04615 7.67557 8.24336 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.015587 C = 0.010670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.168782 B = 1795.928612 C = 2623.518095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.335 6.335 3 C -0.057 4.057 4 C 0.022 3.978 5 N -0.561 5.561 6 C 0.078 3.922 7 C -0.080 4.080 8 C -0.217 4.217 9 C 0.080 3.920 10 C -0.472 4.472 11 H 0.076 0.924 12 C 0.036 3.964 13 N -0.811 5.811 14 Si 0.989 3.011 15 H -0.258 1.258 16 H -0.262 1.262 17 H -0.261 1.261 18 H 0.054 0.946 19 H 0.116 0.884 20 H 0.051 0.949 21 H 0.155 0.845 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.123 0.877 26 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -0.888 -1.585 2.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.249 6.249 3 C -0.105 4.105 4 C -0.132 4.132 5 N -0.278 5.278 6 C -0.055 4.055 7 C -0.137 4.137 8 C -0.240 4.240 9 C 0.072 3.928 10 C -0.502 4.502 11 H 0.094 0.906 12 C -0.181 4.181 13 N -0.437 5.437 14 Si 0.809 3.191 15 H -0.182 1.182 16 H -0.187 1.187 17 H -0.185 1.185 18 H 0.073 0.927 19 H 0.134 0.866 20 H 0.069 0.931 21 H 0.172 0.828 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.141 0.859 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.016 -0.219 -1.437 2.486 hybrid contribution 0.641 -1.186 0.011 1.348 sum -1.375 -1.405 -1.426 2.428 Atomic orbital electron populations 1.23128 0.78305 1.04551 1.01101 1.85875 1.21725 1.26979 1.90316 1.20379 0.93107 0.85271 1.11758 1.22518 0.99452 0.87429 1.03788 1.67147 1.11796 1.26493 1.22354 1.20936 0.89439 0.96776 0.98383 1.20488 0.99795 0.90935 1.02490 1.21604 1.00496 0.91367 1.10487 1.17826 0.89020 0.94963 0.90981 1.19641 0.97284 0.96238 1.37070 0.90589 1.26857 1.00089 0.99576 0.91554 1.69805 1.20267 1.31045 1.22577 0.85099 0.76917 0.77788 0.79296 1.18235 1.18665 1.18492 0.92748 0.86623 0.93069 0.82770 0.90581 0.91113 0.91174 0.85885 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.82 113.37 1.11 1.89 15 2 O -0.34 -15.76 9.90 -89.53 -0.89 -16.65 15 3 C -0.06 -2.97 6.75 23.20 0.16 -2.81 15 4 C 0.02 1.05 10.23 84.78 0.87 1.92 15 5 N -0.56 -27.88 10.23 -184.65 -1.89 -29.77 15 6 C 0.08 3.86 6.73 42.12 0.28 4.15 15 7 C -0.08 -3.04 10.15 71.24 0.72 -2.32 15 8 C -0.22 -11.73 8.34 22.57 0.19 -11.54 15 9 C 0.08 4.55 5.62 -21.01 -0.12 4.44 15 10 C -0.47 -26.24 8.81 23.44 0.21 -26.03 15 11 H 0.08 4.22 7.71 -2.91 -0.02 4.19 15 12 C 0.04 1.83 5.20 85.29 0.44 2.27 15 13 N -0.81 -41.73 10.91 21.84 0.24 -41.49 15 14 Si 0.99 37.93 29.59 68.60 2.03 39.96 15 15 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15 16 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 18 H 0.05 1.61 7.68 -2.39 -0.02 1.59 15 19 H 0.12 2.95 8.14 -2.39 -0.02 2.93 15 20 H 0.05 1.55 7.69 -2.38 -0.02 1.53 15 21 H 0.16 6.18 6.34 -2.91 -0.02 6.16 15 22 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.07 2.53 8.07 -2.38 -0.02 2.51 15 25 H 0.12 6.71 6.18 -2.91 -0.02 6.69 15 26 H 0.29 13.43 8.29 -92.70 -0.77 12.66 15 Total: -1.00 -63.92 229.99 4.54 -59.38 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.18 Total: 16.61 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 3.86 Total: -28.04 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -1.65 Total: -71.26 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.89 Total: -16.65 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -63.92 4.54 -59.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306986528.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.064 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds