Wall clock time and date at job start Mon Mar 30 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35680 * 116.99880 * 2 1 4 4 C 1.39555 * 120.28562 * 0.02562 * 3 2 1 5 5 N 1.31316 * 120.76623 * 180.02562 * 4 3 2 6 6 C 1.33711 * 121.43688 * 359.97438 * 5 4 3 7 7 C 1.41172 * 119.74784 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99797 * 180.02562 * 7 6 5 9 9 C 1.39995 * 120.00029 * 0.02562 * 7 6 5 10 10 N 1.30783 * 120.00146 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00021 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.46982 * 60.00027 * 11 9 7 13 13 H 1.48496 * 109.47082 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47016 * 299.99997 * 11 9 7 15 15 C 1.40742 * 120.50386 * 0.02562 * 6 5 4 16 16 C 1.50705 * 120.40164 * 179.97438 * 15 6 5 17 17 C 1.36901 * 119.20002 * 359.97438 * 15 6 5 18 18 H 1.09010 * 109.46882 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.46942 * 299.99184 * 1 2 3 20 20 H 1.08997 * 109.47592 * 59.99904 * 1 2 3 21 21 H 1.08004 * 119.61334 * 359.74369 * 4 3 2 22 22 H 0.97006 * 119.99721 * 180.02562 * 10 9 7 23 23 H 1.09000 * 109.46600 * 270.01868 * 16 15 6 24 24 H 1.08998 * 109.46927 * 30.01766 * 16 15 6 25 25 H 1.08995 * 109.46942 * 150.01953 * 16 15 6 26 26 H 1.07999 * 120.66630 * 179.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2907 2.3831 0.0005 5 7 1.8770 3.5581 0.0000 6 6 3.2092 3.6727 -0.0005 7 6 3.8020 4.9540 -0.0005 8 1 4.8776 5.0513 -0.0013 9 6 2.9956 6.0983 0.0006 10 7 1.6931 5.9805 0.0012 11 14 3.7800 7.7937 -0.0001 12 1 4.6217 7.9492 -1.2135 13 1 2.7172 8.8309 0.0007 14 1 4.6246 7.9488 1.2115 15 6 4.0249 2.5258 -0.0011 16 6 5.5262 2.6577 -0.0022 17 6 3.4382 1.2889 -0.0005 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 0.2122 2.3246 -0.0032 22 1 1.1344 6.7735 0.0016 23 1 5.8872 2.6898 -1.0302 24 1 5.8106 3.5760 0.5116 25 1 5.9664 1.8028 0.5110 26 1 4.0414 0.3931 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307036897.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:29 Heat of formation + Delta-G solvation = -10.457860 kcal Electronic energy + Delta-G solvation = -11732.592000 eV Core-core repulsion = 9583.578980 eV Total energy + Delta-G solvation = -2149.013020 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.94661 -36.88313 -33.37871 -32.14347 -29.75706 -27.25769 -25.79475 -24.99623 -21.61168 -20.13512 -17.48989 -16.46627 -15.95763 -14.81778 -14.80563 -14.09789 -13.19702 -12.78832 -12.65016 -12.20034 -11.57275 -11.48047 -11.24012 -11.20728 -11.00925 -10.93063 -10.42368 -10.34984 -9.78255 -9.17251 -8.01941 -7.58755 -7.17522 -6.39053 -4.37819 2.70474 2.94799 3.09542 3.11637 3.21301 3.96632 4.36981 4.74550 5.69482 5.74170 5.83138 5.86239 6.02683 6.14769 6.24241 6.55493 6.60758 6.65822 6.77250 6.95019 7.22447 7.43329 7.58957 7.89055 8.20257 8.44220 8.70607 8.95767 10.05909 10.34594 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.051356 B = 0.011650 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.083497 B = 2402.794520 C = 2927.432279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.333 6.333 3 C -0.084 4.084 4 C 0.056 3.944 5 N -0.458 5.458 6 C 0.240 3.760 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.068 3.932 10 N -0.722 5.722 11 Si 0.906 3.094 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.265 1.265 15 C -0.216 4.216 16 C -0.080 4.080 17 C -0.076 4.076 18 H 0.081 0.919 19 H 0.042 0.958 20 H 0.042 0.958 21 H 0.122 0.878 22 H 0.272 0.728 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -2.985 0.019 3.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.248 6.248 3 C -0.132 4.132 4 C -0.109 4.109 5 N -0.171 5.171 6 C 0.114 3.886 7 C -0.464 4.464 8 H 0.106 0.894 9 C -0.156 4.156 10 N -0.344 5.344 11 Si 0.731 3.269 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.190 1.190 15 C -0.221 4.221 16 C -0.138 4.138 17 C -0.100 4.100 18 H 0.100 0.900 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.139 0.861 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.205 -2.272 0.019 2.282 hybrid contribution 0.397 0.066 -0.016 0.403 sum 0.192 -2.206 0.003 2.215 Atomic orbital electron populations 1.22694 0.80941 1.01690 1.00448 1.85772 1.19132 1.28274 1.91590 1.19690 0.92703 0.84426 1.16340 1.22845 0.98672 0.88550 1.00808 1.68729 1.10798 1.21727 1.15821 1.18444 0.87358 0.92271 0.90568 1.19531 0.94434 0.89154 1.43318 0.89444 1.26067 0.94713 1.01189 0.93666 1.70141 1.04392 1.30515 1.29396 0.86409 0.79652 0.81018 0.79854 1.18958 1.20307 1.18956 1.20162 0.95854 0.92993 1.13056 1.20369 0.92389 1.00812 1.00190 1.19829 0.91014 0.96726 1.02467 0.90046 0.93894 0.93891 0.86062 0.91683 0.93416 0.91804 0.94091 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.62 15 2 O -0.33 -7.10 10.50 -18.74 -0.20 -7.30 15 3 C -0.08 -2.03 6.74 -38.60 -0.26 -2.29 15 4 C 0.06 1.41 10.22 -17.28 -0.18 1.23 15 5 N -0.46 -12.94 7.85 -10.96 -0.09 -13.02 15 6 C 0.24 6.62 6.55 -84.99 -0.56 6.06 15 7 C -0.43 -11.54 8.67 -37.81 -0.33 -11.87 15 8 H 0.09 2.15 6.00 -52.49 -0.31 1.83 15 9 C 0.07 1.75 5.50 -17.34 -0.10 1.65 15 10 N -0.72 -19.48 11.45 55.55 0.64 -18.84 15 11 Si 0.91 18.64 29.56 -169.99 -5.02 13.61 15 12 H -0.26 -5.36 7.11 56.52 0.40 -4.95 15 13 H -0.28 -5.60 7.11 56.52 0.40 -5.19 15 14 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 15 C -0.22 -5.32 5.92 -104.16 -0.62 -5.93 15 16 C -0.08 -1.63 9.50 36.01 0.34 -1.29 15 17 C -0.08 -1.80 9.72 -39.57 -0.38 -2.18 15 18 H 0.08 1.05 8.14 -51.92 -0.42 0.62 15 19 H 0.04 0.68 7.67 -51.93 -0.40 0.28 15 20 H 0.04 0.68 7.67 -51.93 -0.40 0.28 15 21 H 0.12 2.73 6.31 -52.48 -0.33 2.40 15 22 H 0.27 6.67 8.30 -40.82 -0.34 6.33 15 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.06 1.28 6.33 -51.93 -0.33 0.95 15 25 H 0.04 0.73 8.09 -51.93 -0.42 0.31 15 26 H 0.10 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 228.00 15.07 3.44 3.44 Total: -1.00 -30.04 228.00 -4.91 -34.95 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -2.59 Total: 0.16 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.08 Total: -13.00 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.55 Total: -31.87 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.20 Total: -7.30 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.04 -4.91 -34.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307036897.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.493 kcal (2) G-P(sol) polarization free energy of solvation -30.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds