Wall clock time and date at job start Mon Mar 30 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35680 * 116.99880 * 2 1 4 4 C 1.39555 * 120.28562 * 0.02562 * 3 2 1 5 5 N 1.31316 * 120.76623 * 180.02562 * 4 3 2 6 6 C 1.33711 * 121.43688 * 359.97438 * 5 4 3 7 7 C 1.41172 * 119.74784 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99797 * 180.02562 * 7 6 5 9 9 C 1.39995 * 120.00029 * 0.02562 * 7 6 5 10 10 N 1.30783 * 120.00146 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00021 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.46982 * 60.00027 * 11 9 7 13 13 H 1.48496 * 109.47082 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47016 * 299.99997 * 11 9 7 15 15 C 1.40742 * 120.50386 * 0.02562 * 6 5 4 16 16 C 1.50705 * 120.40164 * 179.97438 * 15 6 5 17 17 C 1.36901 * 119.20002 * 359.97438 * 15 6 5 18 18 H 1.09010 * 109.46882 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.46942 * 299.99184 * 1 2 3 20 20 H 1.08997 * 109.47592 * 59.99904 * 1 2 3 21 21 H 1.08004 * 119.61334 * 359.74369 * 4 3 2 22 22 H 0.97006 * 119.99721 * 180.02562 * 10 9 7 23 23 H 1.09000 * 109.46600 * 270.01868 * 16 15 6 24 24 H 1.08998 * 109.46927 * 30.01766 * 16 15 6 25 25 H 1.08995 * 109.46942 * 150.01953 * 16 15 6 26 26 H 1.07999 * 120.66630 * 179.97438 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2907 2.3831 0.0005 5 7 1.8770 3.5581 0.0000 6 6 3.2092 3.6727 -0.0005 7 6 3.8020 4.9540 -0.0005 8 1 4.8776 5.0513 -0.0013 9 6 2.9956 6.0983 0.0006 10 7 1.6931 5.9805 0.0012 11 14 3.7800 7.7937 -0.0001 12 1 4.6217 7.9492 -1.2135 13 1 2.7172 8.8309 0.0007 14 1 4.6246 7.9488 1.2115 15 6 4.0249 2.5258 -0.0011 16 6 5.5262 2.6577 -0.0022 17 6 3.4382 1.2889 -0.0005 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3633 0.5137 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 0.2122 2.3246 -0.0032 22 1 1.1344 6.7735 0.0016 23 1 5.8872 2.6898 -1.0302 24 1 5.8106 3.5760 0.5116 25 1 5.9664 1.8028 0.5110 26 1 4.0414 0.3931 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307036897.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:29 Heat of formation + Delta-G solvation = -29.828267 kcal Electronic energy + Delta-G solvation = -11733.431964 eV Core-core repulsion = 9583.578980 eV Total energy + Delta-G solvation = -2149.852984 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.77104 -38.63124 -35.26334 -33.99540 -31.60242 -28.92782 -27.35254 -26.88660 -23.52673 -21.93038 -19.40775 -18.18403 -17.76505 -16.62867 -16.38062 -15.86085 -14.84619 -14.51674 -14.40811 -13.88356 -13.27035 -13.15055 -13.05007 -12.83626 -12.73610 -12.43427 -12.08030 -12.04581 -11.59693 -11.00685 -9.88774 -9.51213 -9.08434 -8.26975 -6.33846 0.81919 1.07514 1.43165 1.55342 1.56640 2.25893 2.79078 2.85013 3.86238 4.06873 4.28851 4.46474 4.46872 4.57010 4.74174 4.78110 4.89835 4.97963 5.05100 5.23294 5.36049 5.58240 5.77091 6.01945 6.26947 6.63906 6.82583 7.03219 8.12812 8.49959 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.051356 B = 0.011650 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.083497 B = 2402.794520 C = 2927.432279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.341 6.341 3 C -0.075 4.075 4 C 0.032 3.968 5 N -0.495 5.495 6 C 0.201 3.799 7 C -0.464 4.464 8 H 0.100 0.900 9 C 0.020 3.980 10 N -0.766 5.766 11 Si 0.987 3.013 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.257 1.257 15 C -0.221 4.221 16 C -0.076 4.076 17 C -0.090 4.090 18 H 0.122 0.878 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.138 0.862 22 H 0.276 0.724 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -3.340 0.017 3.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.256 6.256 3 C -0.123 4.123 4 C -0.131 4.131 5 N -0.209 5.209 6 C 0.074 3.926 7 C -0.496 4.496 8 H 0.118 0.882 9 C -0.200 4.200 10 N -0.389 5.389 11 Si 0.807 3.193 12 H -0.181 1.181 13 H -0.198 1.198 14 H -0.181 1.181 15 C -0.226 4.226 16 C -0.133 4.133 17 C -0.115 4.115 18 H 0.140 0.860 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.155 0.845 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.644 -2.670 0.017 2.746 hybrid contribution 0.050 -0.018 -0.016 0.056 sum 0.694 -2.688 0.000 2.776 Atomic orbital electron populations 1.23053 0.78244 1.04523 1.00776 1.85762 1.21879 1.26737 1.91197 1.19831 0.93194 0.85036 1.14240 1.23137 0.99668 0.88587 1.01680 1.68652 1.11738 1.23328 1.17197 1.18975 0.87818 0.93908 0.91858 1.19938 0.95324 0.89734 1.44559 0.88185 1.27039 0.95053 1.05339 0.92593 1.70263 1.06044 1.31905 1.30727 0.85198 0.78641 0.75297 0.80179 1.18141 1.19757 1.18103 1.20637 0.98015 0.92521 1.11401 1.20393 0.89591 1.01955 1.01384 1.20208 0.91431 0.97508 1.02361 0.86003 0.93549 0.93546 0.84523 0.91320 0.92083 0.91945 0.91398 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.81 113.37 1.11 1.99 15 2 O -0.34 -13.94 10.50 -89.97 -0.94 -14.88 15 3 C -0.08 -3.56 6.74 22.91 0.15 -3.41 15 4 C 0.03 1.63 10.22 85.09 0.87 2.50 15 5 N -0.50 -28.67 7.85 -188.58 -1.48 -30.15 15 6 C 0.20 11.27 6.55 40.19 0.26 11.53 15 7 C -0.46 -24.98 8.67 23.42 0.20 -24.77 15 8 H 0.10 4.89 6.00 -2.91 -0.02 4.87 15 9 C 0.02 1.04 5.50 85.28 0.47 1.50 15 10 N -0.77 -42.30 11.45 21.83 0.25 -42.05 15 11 Si 0.99 38.19 29.56 68.60 2.03 40.22 15 12 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 13 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 14 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 15 C -0.22 -10.77 5.92 -19.56 -0.12 -10.88 15 16 C -0.08 -2.95 9.50 71.24 0.68 -2.27 15 17 C -0.09 -4.20 9.72 22.27 0.22 -3.98 15 18 H 0.12 2.72 8.14 -2.38 -0.02 2.70 15 19 H 0.05 1.38 7.67 -2.39 -0.02 1.37 15 20 H 0.05 1.39 7.67 -2.39 -0.02 1.37 15 21 H 0.14 6.23 6.31 -2.91 -0.02 6.21 15 22 H 0.28 13.86 8.30 -92.70 -0.77 13.09 15 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.06 2.41 6.33 -2.39 -0.02 2.40 15 25 H 0.07 2.23 8.09 -2.39 -0.02 2.21 15 26 H 0.13 5.22 8.06 -2.91 -0.02 5.19 15 Total: -1.00 -65.06 228.00 4.88 -60.17 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.18 Total: 14.47 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.85 Total: -27.78 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.23 Total: -72.19 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.94 Total: -14.88 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -65.06 4.88 -60.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307036897.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.344 kcal (2) G-P(sol) polarization free energy of solvation -65.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds