Wall clock time and date at job start Mon Mar 30 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86794 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47479 * 269.99788 * 3 2 1 5 5 H 1.48505 * 109.47262 * 30.00074 * 3 2 1 6 6 H 1.48507 * 109.47075 * 149.99918 * 3 2 1 7 7 C 1.39918 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99615 * 197.86763 * 7 2 1 9 9 C 1.41419 * 120.00331 * 17.86153 * 7 2 1 10 10 C 1.40648 * 120.17188 * 204.45919 * 9 7 2 11 11 C 1.38342 * 119.81799 * 180.02562 * 10 9 7 12 12 N 1.39681 * 119.90628 * 180.02562 * 11 10 9 13 13 C 1.39191 * 120.17673 * 359.97438 * 11 10 9 14 14 C 1.39145 * 120.34877 * 0.02861 * 13 11 10 15 15 N 1.39686 * 119.90889 * 179.97438 * 14 13 11 16 16 N 1.36596 * 120.00255 * 359.96986 * 15 14 13 17 17 C 1.38372 * 120.18016 * 359.97149 * 14 13 11 18 18 H 0.97000 * 119.99703 * 0.02562 * 1 2 3 19 19 H 1.08002 * 120.08920 * 0.05531 * 10 9 7 20 20 H 0.97004 * 119.99776 * 179.97438 * 12 11 10 21 21 H 0.96996 * 120.00170 * 359.97013 * 12 11 10 22 22 H 1.08002 * 119.82404 * 180.02562 * 13 11 10 23 23 H 0.97005 * 119.99717 * 179.97438 * 15 14 13 24 24 H 1.00906 * 110.99465 * 56.05216 * 16 15 14 25 25 H 1.00898 * 110.99874 * 180.02562 * 16 15 14 26 26 H 1.07997 * 120.09480 * 179.75212 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4401 0.7001 7 6 2.0079 -1.2118 -0.0005 8 1 3.0488 -1.2345 0.2864 9 6 1.3519 -2.4068 -0.3767 10 6 1.8257 -3.6484 0.0839 11 6 1.1787 -4.8129 -0.2890 12 7 1.6474 -6.0469 0.1678 13 6 0.0615 -4.7581 -1.1174 14 6 -0.4133 -3.5337 -1.5773 15 7 -1.5350 -3.4893 -2.4086 16 7 -2.1639 -4.6470 -2.7695 17 6 0.2226 -2.3598 -1.2133 18 1 -0.4850 0.8401 -0.0004 19 1 2.6920 -3.6925 0.7274 20 1 1.1945 -6.8643 -0.0926 21 1 2.4256 -6.0866 0.7453 22 1 -0.4395 -5.6707 -1.4047 23 1 -1.8673 -2.6364 -2.7296 24 1 -2.4451 -5.1743 -1.9564 25 1 -2.9531 -4.4580 -3.3690 26 1 -0.1447 -1.4106 -1.5743 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307055320.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:24 Heat of formation + Delta-G solvation = 20.171794 kcal Electronic energy + Delta-G solvation = -11620.171691 eV Core-core repulsion = 9504.779624 eV Total energy + Delta-G solvation = -2115.392067 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.77634 -37.38414 -36.00352 -33.90272 -31.52873 -29.42947 -27.25900 -26.89209 -22.53627 -22.06936 -19.18667 -18.55320 -17.54789 -17.04751 -16.35217 -16.19730 -15.92245 -14.79499 -14.43783 -14.21090 -13.69025 -13.19649 -12.74006 -12.55760 -12.44069 -12.07325 -11.70617 -11.38441 -11.11323 -10.59249 -9.54573 -8.55679 -8.26178 -7.51446 -6.27313 1.17706 1.41603 1.54127 1.54956 1.67140 2.27085 2.48895 2.89749 3.45817 3.97188 4.44927 4.87782 5.06999 5.23956 5.30648 5.46441 5.55794 5.84395 6.02251 6.11194 6.22709 6.36862 6.69106 6.91596 6.99617 7.18517 7.35266 7.43629 7.69197 8.44209 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.038769 B = 0.012249 C = 0.009561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.054697 B = 2285.279255 C = 2927.916742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.142 3.858 10 C -0.354 4.354 11 C 0.256 3.744 12 N -0.875 5.875 13 C -0.352 4.352 14 C 0.255 3.745 15 N -0.610 5.610 16 N -0.601 5.601 17 C -0.298 4.298 18 H 0.284 0.716 19 H 0.086 0.914 20 H 0.398 0.602 21 H 0.397 0.603 22 H 0.113 0.887 23 H 0.399 0.601 24 H 0.330 0.670 25 H 0.361 0.639 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -4.082 -2.080 5.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.138 3.862 10 C -0.379 4.379 11 C 0.152 3.848 12 N -0.417 5.417 13 C -0.379 4.379 14 C 0.153 3.847 15 N -0.336 5.336 16 N -0.227 5.227 17 C -0.324 4.324 18 H 0.094 0.906 19 H 0.104 0.896 20 H 0.227 0.773 21 H 0.225 0.775 22 H 0.131 0.869 23 H 0.236 0.764 24 H 0.144 0.856 25 H 0.176 0.824 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.159 -4.262 -2.467 5.377 hybrid contribution -0.684 1.087 0.585 1.411 sum -2.843 -3.174 -1.882 4.658 Atomic orbital electron populations 1.69955 1.08865 1.29908 1.35957 1.26694 0.95478 1.04180 0.91266 0.85261 0.79099 0.76221 0.79374 1.18825 1.19257 1.18435 1.19769 0.98160 0.92710 1.42766 0.91219 1.17367 0.89990 0.92244 0.86569 1.20394 1.08776 0.92206 1.16530 1.17312 0.91247 0.85828 0.90415 1.42191 1.36251 1.04529 1.58685 1.19463 1.05914 0.95703 1.16842 1.17305 0.85548 0.93662 0.88201 1.43152 1.29533 1.03559 1.57326 1.60071 1.32928 1.09079 1.20586 1.20373 1.05245 0.95039 1.11736 0.90600 0.89611 0.77326 0.77507 0.86919 0.76414 0.85609 0.82429 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.23 10.96 21.82 0.24 -43.99 15 2 C 0.04 2.03 5.14 85.25 0.44 2.46 15 3 Si 0.98 39.69 29.59 68.60 2.03 41.72 15 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 15 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 7 C -0.50 -28.72 9.05 23.46 0.21 -28.51 15 8 H 0.07 3.87 7.91 -2.91 -0.02 3.84 15 9 C 0.14 8.17 5.57 -21.32 -0.12 8.05 15 10 C -0.35 -18.60 9.62 22.88 0.22 -18.38 15 11 C 0.26 11.79 6.74 38.14 0.26 12.05 15 12 N -0.88 -30.15 9.09 -51.54 -0.47 -30.62 15 13 C -0.35 -16.15 9.21 22.72 0.21 -15.94 15 14 C 0.26 12.32 6.68 38.14 0.25 12.57 15 15 N -0.61 -23.60 6.65 -51.55 -0.34 -23.94 15 16 N -0.60 -18.18 9.59 37.02 0.35 -17.83 15 17 C -0.30 -16.38 8.52 22.89 0.20 -16.18 15 18 H 0.28 13.77 8.30 -92.71 -0.77 13.00 15 19 H 0.09 4.35 8.06 -2.91 -0.02 4.32 15 20 H 0.40 11.38 8.84 -92.71 -0.82 10.56 15 21 H 0.40 12.09 8.83 -92.71 -0.82 11.27 15 22 H 0.11 4.61 7.01 -2.91 -0.02 4.59 15 23 H 0.40 14.37 8.84 -215.49 -1.90 12.47 15 24 H 0.33 9.49 8.42 -210.55 -1.77 7.72 15 25 H 0.36 8.07 9.21 -210.56 -1.94 6.13 15 26 H 0.10 5.59 6.16 -2.91 -0.02 5.57 15 Total: -1.00 -65.34 229.30 -2.51 -67.85 By element: Atomic # 1 Polarization: 56.67 SS G_CDS: -5.99 Total: 50.69 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 1.67 Total: -43.87 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -0.22 Total: -116.38 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -65.34 -2.51 -67.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307055320.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.020 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds