Wall clock time and date at job start Mon Mar 30 2020 02:13:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30895 * 1
3 3 Si 1.86803 * 120.00133 * 2 1
4 4 H 1.48496 * 109.47096 * 270.00162 * 3 2 1
5 5 H 1.48501 * 109.46980 * 29.99698 * 3 2 1
6 6 H 1.48501 * 109.47439 * 149.99893 * 3 2 1
7 7 C 1.39884 * 120.00173 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99903 * 163.97940 * 7 2 1
9 9 C 1.41023 * 119.99897 * 343.98882 * 7 2 1
10 10 C 1.40661 * 120.26969 * 333.63961 * 9 7 2
11 11 C 1.38003 * 119.77661 * 179.97438 * 10 9 7
12 12 N 1.39851 * 119.84216 * 180.02562 * 11 10 9
13 13 N 1.36605 * 119.99714 * 179.97438 * 12 11 10
14 14 C 1.39605 * 120.31474 * 359.73362 * 11 10 9
15 15 C 1.38059 * 120.55304 * 0.55202 * 14 11 10
16 16 C 1.38735 * 120.21526 * 359.44114 * 15 14 11
17 17 N 1.38864 * 120.16262 * 180.25268 * 16 15 14
18 18 H 0.97004 * 120.00145 * 0.02562 * 1 2 3
19 19 H 1.08004 * 120.11280 * 359.96150 * 10 9 7
20 20 H 0.96996 * 120.00336 * 0.02562 * 12 11 10
21 21 H 1.00906 * 110.99581 * 56.05310 * 13 12 11
22 22 H 1.00898 * 110.99526 * 180.02562 * 13 12 11
23 23 H 1.07999 * 119.72861 * 180.29103 * 14 11 10
24 24 H 1.07993 * 119.89324 * 179.72391 * 15 14 11
25 25 H 0.97001 * 120.00352 * 0.02562 * 17 16 15
26 26 H 0.97000 * 120.00063 * 180.02562 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3089 0.0000 0.0000
3 14 2.2430 1.6177 0.0000
4 1 2.4905 2.0464 -1.4000
5 1 1.4404 2.6527 0.7000
6 1 3.5406 1.4402 0.7000
7 6 2.0084 -1.2114 0.0005
8 1 3.0569 -1.2296 -0.2576
9 6 1.3443 -2.4089 0.3379
10 6 0.2149 -2.3814 1.1759
11 6 -0.4275 -3.5593 1.4991
12 7 -1.5508 -3.5336 2.3317
13 7 -2.1894 -4.6976 2.6532
14 6 0.0351 -4.7758 0.9940
15 6 1.1459 -4.8188 0.1752
16 6 1.8087 -3.6483 -0.1643
17 7 2.9227 -3.6923 -0.9922
18 1 -0.4850 0.8401 -0.0004
19 1 -0.1483 -1.4417 1.5652
20 1 -1.8770 -2.6892 2.6802
21 1 -1.5508 -5.3561 3.0736
22 1 -2.9782 -4.5222 3.2575
23 1 -0.4776 -5.6914 1.2493
24 1 1.4971 -5.7662 -0.2060
25 1 3.2390 -4.5428 -1.3350
26 1 3.3846 -2.8725 -1.2278
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307094797.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:13:18
Heat of formation + Delta-G solvation = 25.609396 kcal
Electronic energy + Delta-G solvation = -11710.056557 eV
Core-core repulsion = 9594.900282 eV
Total energy + Delta-G solvation = -2115.156275 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.091 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.76935 -37.50031 -35.32544 -34.07345 -31.29918 -30.19014 -27.01539 -26.34380
-23.05220 -21.58722 -19.06868 -18.62741 -17.40163 -17.03725 -16.79738 -16.35545
-15.51208 -14.40528 -14.21370 -13.95967 -13.76742 -13.11439 -12.96552 -12.68175
-12.49781 -12.10051 -11.78835 -11.20583 -10.91684 -10.65228 -9.18506 -8.88798
-8.47908 -7.19998 -5.98936 1.13789 1.42792 1.50091 1.55623 1.65165
2.28794 2.59153 2.93442 3.78369 3.96457 4.45235 4.71430 4.92932
5.24677 5.36454 5.49793 5.53734 5.95927 6.00591 6.09935 6.27051
6.41533 6.62422 7.00621 7.10239 7.17323 7.47414 7.68410 7.76608
8.52699
Molecular weight = 193.09amu
Principal moments of inertia in cm(-1)
A = 0.037327 B = 0.013361 C = 0.010114
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 749.937560 B = 2095.075994 C = 2767.698716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.835 5.835
2 C 0.032 3.968
3 Si 0.976 3.024
4 H -0.266 1.266
5 H -0.274 1.274
6 H -0.261 1.261
7 C -0.493 4.493
8 H 0.076 0.924
9 C 0.061 3.939
10 C -0.224 4.224
11 C 0.176 3.824
12 N -0.617 5.617
13 N -0.603 5.603
14 C -0.246 4.246
15 C -0.160 4.160
16 C 0.072 3.928
17 N -0.878 5.878
18 H 0.279 0.721
19 H 0.099 0.901
20 H 0.395 0.605
21 H 0.328 0.672
22 H 0.359 0.641
23 H 0.110 0.890
24 H 0.113 0.887
25 H 0.391 0.609
26 H 0.390 0.610
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.557 -2.782 3.074 4.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.463 5.463
2 C -0.180 4.180
3 Si 0.798 3.202
4 H -0.191 1.191
5 H -0.199 1.199
6 H -0.185 1.185
7 C -0.524 4.524
8 H 0.094 0.906
9 C 0.055 3.945
10 C -0.250 4.250
11 C 0.075 3.925
12 N -0.346 5.346
13 N -0.228 5.228
14 C -0.271 4.271
15 C -0.184 4.184
16 C -0.031 4.031
17 N -0.422 5.422
18 H 0.090 0.910
19 H 0.117 0.883
20 H 0.232 0.768
21 H 0.143 0.857
22 H 0.174 0.826
23 H 0.128 0.872
24 H 0.130 0.870
25 H 0.219 0.781
26 H 0.218 0.782
Dipole moment (debyes) X Y Z Total
from point charges 0.094 -2.859 2.357 3.707
hybrid contribution 0.430 1.236 0.940 1.611
sum 0.524 -1.623 3.297 3.712
Atomic orbital electron populations
1.69967 1.08744 1.29443 1.38115 1.26585 0.95410 1.03951 0.92062
0.85307 0.79044 0.76794 0.79068 1.19125 1.19886 1.18469 1.19377
0.97224 0.91973 1.43805 0.90646 1.17313 0.93445 0.91638 0.92063
1.20375 1.02598 0.95055 1.06957 1.17470 0.87519 0.94109 0.93376
1.43049 1.32785 1.03167 1.55551 1.60050 1.09220 1.02195 1.51368
1.19878 1.02281 0.95380 1.09526 1.20089 0.98776 0.95489 1.04072
1.18058 0.93225 0.93663 0.98124 1.41680 1.32661 1.10244 1.57607
0.91050 0.88296 0.76794 0.85744 0.82648 0.87168 0.86951 0.78143
0.78156
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -45.01 10.97 21.82 0.24 -44.77 15
2 C 0.03 1.67 5.16 85.23 0.44 2.11 15
3 Si 0.98 39.14 29.59 68.60 2.03 41.17 15
4 H -0.27 -10.31 7.11 99.48 0.71 -9.61 15
5 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15
6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15
7 C -0.49 -26.45 8.48 23.35 0.20 -26.25 15
8 H 0.08 3.82 6.71 -2.91 -0.02 3.80 15
9 C 0.06 3.32 5.57 -21.18 -0.12 3.21 15
10 C -0.22 -12.09 8.49 22.81 0.19 -11.90 15
11 C 0.18 8.45 6.69 38.14 0.26 8.71 15
12 N -0.62 -24.27 6.66 -51.38 -0.34 -24.61 15
13 N -0.60 -18.77 9.58 37.02 0.35 -18.42 15
14 C -0.25 -11.34 9.35 22.56 0.21 -11.13 15
15 C -0.16 -7.31 9.86 22.35 0.22 -7.09 15
16 C 0.07 3.50 6.79 38.97 0.26 3.77 15
17 N -0.88 -35.60 8.98 -50.31 -0.45 -36.05 15
18 H 0.28 13.79 8.30 -92.71 -0.77 13.03 15
19 H 0.10 5.57 6.23 -2.91 -0.02 5.56 15
20 H 0.40 14.57 8.83 -215.50 -1.90 12.67 15
21 H 0.33 9.50 8.43 -210.55 -1.78 7.73 15
22 H 0.36 8.38 9.21 -210.56 -1.94 6.44 15
23 H 0.11 4.57 7.01 -2.91 -0.02 4.55 15
24 H 0.11 4.42 8.06 -2.91 -0.02 4.39 15
25 H 0.39 13.04 8.83 -92.71 -0.82 12.22 15
26 H 0.39 15.60 7.05 -92.71 -0.65 14.95 15
Total: -1.00 -62.66 226.16 -2.33 -64.98
By element:
Atomic # 1 Polarization: 62.10 SS G_CDS: -5.82 Total: 56.28 kcal
Atomic # 6 Polarization: -40.25 SS G_CDS: 1.66 Total: -38.59 kcal
Atomic # 7 Polarization: -123.65 SS G_CDS: -0.20 Total: -123.85 kcal
Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal
Total: -62.66 -2.33 -64.98 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307094797.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.592 kcal
(2) G-P(sol) polarization free energy of solvation -62.656 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds