Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35681 * 117.00159 * 2 1 4 4 C 1.39552 * 120.28407 * 359.97438 * 3 2 1 5 5 N 1.31323 * 120.76779 * 179.97438 * 4 3 2 6 6 C 1.33715 * 121.42634 * 0.03151 * 5 4 3 7 7 C 1.41178 * 119.73859 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99953 * 187.23324 * 7 6 5 9 9 C 1.39993 * 120.00373 * 7.23446 * 7 6 5 10 10 N 1.30780 * 119.99985 * 7.24254 * 9 7 6 11 11 Si 1.86803 * 120.00216 * 187.24709 * 9 7 6 12 12 H 1.48498 * 109.47195 * 265.04801 * 11 9 7 13 13 H 1.48502 * 109.46918 * 25.04228 * 11 9 7 14 14 H 1.48500 * 109.47313 * 145.04412 * 11 9 7 15 15 C 1.40737 * 120.51122 * 0.26620 * 6 5 4 16 16 C 1.36891 * 119.19622 * 359.43496 * 15 6 5 17 17 C 1.50705 * 120.66627 * 180.28359 * 16 15 6 18 18 H 1.08999 * 109.47213 * 59.99852 * 1 2 3 19 19 H 1.09004 * 109.47248 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46933 * 300.00088 * 1 2 3 21 21 H 1.08008 * 119.61639 * 0.02910 * 4 3 2 22 22 H 0.97004 * 119.99725 * 180.02562 * 10 9 7 23 23 H 1.08000 * 120.39913 * 179.72587 * 15 6 5 24 24 H 1.08999 * 109.46915 * 270.27983 * 17 16 15 25 25 H 1.08998 * 109.47035 * 30.27636 * 17 16 15 26 26 H 1.08999 * 109.47371 * 150.27865 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2908 2.3831 -0.0005 5 7 1.8771 3.5581 0.0000 6 6 3.2093 3.6725 0.0004 7 6 3.8022 4.9538 0.0004 8 1 4.8711 5.0542 -0.1171 9 6 3.0046 6.0942 0.1526 10 7 1.7339 5.9704 0.4359 11 14 3.7553 7.7928 -0.0491 12 1 4.1476 8.3219 1.2818 13 1 4.9552 7.7035 -0.9194 14 1 2.7601 8.7034 -0.6700 15 6 4.0250 2.5257 -0.0054 16 6 3.4382 1.2889 0.0004 17 6 4.2799 0.0388 0.0010 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 0.2123 2.3247 -0.0005 22 1 1.1812 6.7606 0.5410 23 1 5.1009 2.6202 -0.0095 24 1 4.4832 -0.2628 -1.0266 25 1 5.2209 0.2346 0.5151 26 1 3.7444 -0.7596 0.5148 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307114923.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = -13.032675 kcal Electronic energy + Delta-G solvation = -11697.861682 eV Core-core repulsion = 9548.737010 eV Total energy + Delta-G solvation = -2149.124672 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99779 -36.72095 -33.54363 -32.25636 -29.52837 -26.99177 -26.23190 -25.11146 -21.20735 -20.65065 -17.17732 -16.68576 -15.71743 -14.89776 -14.83410 -14.03416 -13.09929 -12.94729 -12.82230 -12.13243 -11.82833 -11.73138 -11.20297 -11.09614 -10.91082 -10.78814 -10.56089 -10.41445 -9.94022 -9.15106 -8.02302 -7.57950 -7.16743 -6.44113 -4.37504 2.72835 2.91312 3.10866 3.14027 3.19916 3.97584 4.37395 4.73126 5.68889 5.74682 5.79807 5.83918 5.94993 6.01863 6.14483 6.34220 6.50717 6.60103 6.79520 6.96500 7.23841 7.42645 7.50171 7.91218 8.20994 8.44291 8.70920 8.95631 10.05499 10.34544 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.058794 B = 0.010701 C = 0.009138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.123281 B = 2615.998619 C = 3063.284275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.329 6.329 3 C -0.085 4.085 4 C 0.062 3.938 5 N -0.464 5.464 6 C 0.241 3.759 7 C -0.437 4.437 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.726 5.726 11 Si 0.907 3.093 12 H -0.271 1.271 13 H -0.261 1.261 14 H -0.276 1.276 15 C -0.244 4.244 16 C -0.048 4.048 17 C -0.096 4.096 18 H 0.042 0.958 19 H 0.081 0.919 20 H 0.042 0.958 21 H 0.123 0.877 22 H 0.273 0.727 23 H 0.106 0.894 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -4.400 -0.475 4.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.244 6.244 3 C -0.132 4.132 4 C -0.103 4.103 5 N -0.177 5.177 6 C 0.115 3.885 7 C -0.469 4.469 8 H 0.101 0.899 9 C -0.153 4.153 10 N -0.348 5.348 11 Si 0.731 3.269 12 H -0.196 1.196 13 H -0.185 1.185 14 H -0.201 1.201 15 C -0.267 4.267 16 C -0.055 4.055 17 C -0.153 4.153 18 H 0.061 0.939 19 H 0.099 0.901 20 H 0.061 0.939 21 H 0.140 0.860 22 H 0.084 0.916 23 H 0.124 0.876 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.792 -3.695 -0.425 3.803 hybrid contribution 0.431 0.181 -0.059 0.471 sum -0.362 -3.514 -0.484 3.566 Atomic orbital electron populations 1.22694 0.81052 1.01665 1.00418 1.85762 1.18955 1.28110 1.91553 1.19491 0.92145 0.84476 1.17094 1.22821 0.98635 0.88501 1.00379 1.68644 1.11055 1.21983 1.16062 1.18539 0.87529 0.92617 0.89807 1.19471 0.94917 0.89404 1.43096 0.89850 1.26021 0.94619 1.01211 0.93436 1.70080 1.05563 1.30747 1.28430 0.86333 0.79936 0.81365 0.79269 1.19581 1.18495 1.20109 1.21287 0.99100 0.91939 1.14403 1.18848 0.90394 0.95056 1.01169 1.20495 0.98176 0.95645 1.00943 0.93946 0.90064 0.93918 0.86009 0.91628 0.87589 0.92533 0.92717 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.60 15 2 O -0.33 -6.87 9.65 -18.74 -0.18 -7.05 15 3 C -0.08 -2.02 6.71 -38.60 -0.26 -2.28 15 4 C 0.06 1.55 10.22 -17.28 -0.18 1.37 15 5 N -0.46 -13.15 7.96 -10.96 -0.09 -13.24 15 6 C 0.24 6.74 6.52 -84.99 -0.55 6.18 15 7 C -0.44 -11.90 9.12 -37.81 -0.34 -12.25 15 8 H 0.08 2.11 7.86 -52.49 -0.41 1.70 15 9 C 0.07 1.85 5.47 -17.34 -0.09 1.76 15 10 N -0.73 -19.72 11.56 55.55 0.64 -19.08 15 11 Si 0.91 18.83 29.57 -169.99 -5.03 13.80 15 12 H -0.27 -5.51 7.11 56.52 0.40 -5.10 15 13 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 14 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 15 C -0.24 -6.14 9.46 -39.13 -0.37 -6.51 15 16 C -0.05 -1.13 5.89 -104.62 -0.62 -1.74 15 17 C -0.10 -1.80 9.84 36.01 0.35 -1.45 15 18 H 0.04 0.66 7.67 -51.93 -0.40 0.26 15 19 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.04 0.67 7.67 -51.93 -0.40 0.27 15 21 H 0.12 2.73 6.31 -52.48 -0.33 2.40 15 22 H 0.27 6.69 8.29 -40.82 -0.34 6.35 15 23 H 0.11 2.43 8.06 -52.49 -0.42 2.01 15 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.05 0.93 8.10 -51.93 -0.42 0.51 15 26 H 0.06 1.08 7.61 -51.93 -0.40 0.68 15 LS Contribution 230.93 15.07 3.48 3.48 Total: -1.00 -30.29 230.93 -5.00 -35.29 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -2.76 Total: 0.10 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -1.07 Total: -13.30 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.55 Total: -32.32 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.18 Total: -7.05 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.29 -5.00 -35.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307114923.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.255 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds