Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30923 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48507 * 109.47369 * 275.43181 * 3 2 1 5 5 H 1.48496 * 109.47254 * 35.42969 * 3 2 1 6 6 H 1.48494 * 109.47111 * 155.43175 * 3 2 1 7 7 C 1.39828 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99206 * 341.94085 * 7 2 1 9 9 C 1.41107 * 120.00388 * 161.94366 * 7 2 1 10 10 C 1.40919 * 120.12928 * 150.16001 * 9 7 2 11 11 C 1.36391 * 120.08655 * 180.29529 * 10 9 7 12 12 C 1.39358 * 120.35567 * 359.45507 * 11 10 9 13 13 N 1.39008 * 119.87566 * 180.27735 * 12 11 10 14 14 C 1.40262 * 120.24841 * 0.30110 * 12 11 10 15 15 N 1.39871 * 120.04749 * 180.02562 * 14 12 11 16 16 N 1.36594 * 120.00125 * 179.97438 * 15 14 12 17 17 C 1.37861 * 119.90636 * 359.97309 * 14 12 11 18 18 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 19 19 H 1.07995 * 119.95536 * 0.04720 * 10 9 7 20 20 H 1.08003 * 119.81997 * 179.73125 * 11 10 9 21 21 H 0.97000 * 119.99932 * 0.02562 * 13 12 11 22 22 H 0.97003 * 119.99608 * 180.02562 * 13 12 11 23 23 H 0.96998 * 119.99888 * 359.97438 * 15 14 12 24 24 H 1.00905 * 110.99824 * 56.04370 * 16 15 14 25 25 H 1.00905 * 111.00082 * 179.97438 * 16 15 14 26 26 H 1.08004 * 120.17165 * 179.97438 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3759 2.1128 -1.3938 5 1 1.5027 2.6168 0.8116 6 1 3.5934 1.4098 0.5821 7 6 2.0085 -1.2109 -0.0005 8 1 1.5083 -2.1233 0.2890 9 6 3.3674 -1.2408 -0.3793 10 6 4.2340 -2.2064 0.1708 11 6 5.5487 -2.2307 -0.1913 12 6 6.0420 -1.3106 -1.1145 13 7 7.3825 -1.3481 -1.4808 14 6 5.1913 -0.3466 -1.6750 15 7 5.6908 0.5745 -2.6015 16 7 4.8613 1.5126 -3.1472 17 6 3.8618 -0.3089 -1.3122 18 1 -0.4850 0.8401 0.0004 19 1 3.8574 -2.9254 0.8832 20 1 6.2100 -2.9698 0.2363 21 1 7.9724 -2.0141 -1.0943 22 1 7.7278 -0.7083 -2.1229 23 1 6.6262 0.5471 -2.8566 24 1 4.4134 2.0611 -2.4284 25 1 5.3605 2.1040 -3.7946 26 1 3.2030 0.4319 -1.7408 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307128455.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 53.919169 kcal Electronic energy + Delta-G solvation = -11879.508034 eV Core-core repulsion = 9765.579363 eV Total energy + Delta-G solvation = -2113.928671 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.53842 -35.68826 -34.20363 -32.48792 -29.79671 -28.88330 -26.31563 -24.00153 -21.24532 -20.16109 -18.12638 -16.68117 -16.49462 -15.46052 -15.23065 -14.59669 -14.11121 -13.12852 -12.79446 -12.39375 -12.26002 -12.07795 -11.18178 -10.77625 -10.65158 -10.30552 -9.88748 -9.56624 -9.28760 -8.79372 -8.28600 -6.93585 -6.70746 -5.96263 -4.10777 2.88707 2.88983 3.21997 3.35322 3.44771 3.71255 4.16606 4.73162 4.87563 5.52124 5.70768 6.03387 6.56195 6.69962 6.81924 7.08188 7.22376 7.27161 7.46183 7.63016 7.91093 8.19688 8.26854 8.52895 8.63679 8.69876 8.85458 9.00498 9.08214 10.33637 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.016451 C = 0.012398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.306544 B = 1701.593793 C = 2257.795745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.084 3.916 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.298 1.298 6 H -0.250 1.250 7 C -0.452 4.452 8 H 0.087 0.913 9 C 0.090 3.910 10 C -0.209 4.209 11 C -0.114 4.114 12 C 0.031 3.969 13 N -0.898 5.898 14 C 0.186 3.814 15 N -0.616 5.616 16 N -0.598 5.598 17 C -0.252 4.252 18 H 0.280 0.720 19 H 0.098 0.902 20 H 0.094 0.906 21 H 0.384 0.616 22 H 0.374 0.626 23 H 0.385 0.615 24 H 0.324 0.676 25 H 0.340 0.660 26 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.230 3.273 -2.805 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.132 4.132 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.226 1.226 6 H -0.174 1.174 7 C -0.483 4.483 8 H 0.105 0.895 9 C 0.086 3.914 10 C -0.231 4.231 11 C -0.137 4.137 12 C -0.070 4.070 13 N -0.444 5.444 14 C 0.085 3.915 15 N -0.346 5.346 16 N -0.222 5.222 17 C -0.276 4.276 18 H 0.090 0.910 19 H 0.116 0.884 20 H 0.112 0.888 21 H 0.210 0.790 22 H 0.199 0.801 23 H 0.221 0.779 24 H 0.139 0.861 25 H 0.151 0.849 26 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.270 2.836 -3.074 10.170 hybrid contribution 1.560 1.621 0.143 2.254 sum 10.830 4.456 -2.931 12.072 Atomic orbital electron populations 1.69758 1.07928 1.29576 1.37769 1.26054 0.94608 1.01390 0.91194 0.86334 0.81013 0.80304 0.78363 1.19570 1.22644 1.17361 1.19278 0.93259 0.95872 1.39845 0.89506 1.17448 0.93066 0.90975 0.89918 1.20471 0.92592 1.04557 1.05430 1.19726 0.95951 0.98623 0.99370 1.16757 0.84207 1.01205 1.04817 1.41526 1.07864 1.41029 1.53974 1.16954 0.92852 0.90164 0.91486 1.42892 1.08175 1.32244 1.51241 1.60215 1.27213 1.17024 1.17717 1.20403 0.93084 1.07560 1.06539 0.91013 0.88361 0.88773 0.78972 0.80061 0.77851 0.86074 0.84856 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.17 13.93 55.54 0.77 -22.40 15 2 C 0.08 2.31 5.40 -17.34 -0.09 2.22 15 3 Si 0.91 21.71 24.45 -169.99 -4.16 17.56 15 4 H -0.27 -6.09 6.28 56.52 0.35 -5.74 15 5 H -0.30 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.25 -6.14 6.86 56.52 0.39 -5.75 15 7 C -0.45 -12.89 9.55 -37.90 -0.36 -13.25 15 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 15 9 C 0.09 2.40 5.10 -106.82 -0.54 1.85 15 10 C -0.21 -5.06 9.73 -39.23 -0.38 -5.44 15 11 C -0.11 -2.46 9.80 -39.83 -0.39 -2.85 15 12 C 0.03 0.65 6.79 -83.43 -0.57 0.09 15 13 N -0.90 -14.19 9.04 32.63 0.29 -13.90 15 14 C 0.19 4.16 6.72 -83.57 -0.56 3.60 15 15 N -0.62 -11.19 6.65 32.51 0.22 -10.97 15 16 N -0.60 -10.17 9.59 60.35 0.58 -9.59 15 17 C -0.25 -6.36 6.45 -38.74 -0.25 -6.61 15 18 H 0.28 7.16 8.30 -40.82 -0.34 6.82 15 19 H 0.10 2.25 8.06 -52.49 -0.42 1.83 15 20 H 0.09 1.75 8.06 -52.48 -0.42 1.32 15 21 H 0.38 5.24 8.83 -40.82 -0.36 4.88 15 22 H 0.37 5.09 6.98 -40.82 -0.28 4.80 15 23 H 0.39 5.72 6.99 -185.16 -1.29 4.43 15 24 H 0.32 5.81 7.94 -181.36 -1.44 4.37 15 25 H 0.34 4.25 9.21 -181.36 -1.67 2.58 15 26 H 0.11 2.84 3.71 -52.48 -0.19 2.64 15 LS Contribution 219.57 15.07 3.31 3.31 Total: -1.00 -30.70 219.57 -7.84 -38.54 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -5.71 Total: 17.84 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.15 Total: -20.39 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 1.86 Total: -56.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.16 Total: 17.56 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -30.70 -7.84 -38.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307128455.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.459 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds