Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30923 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48507 * 109.47369 * 275.43181 * 3 2 1 5 5 H 1.48496 * 109.47254 * 35.42969 * 3 2 1 6 6 H 1.48494 * 109.47111 * 155.43175 * 3 2 1 7 7 C 1.39828 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99206 * 341.94085 * 7 2 1 9 9 C 1.41107 * 120.00388 * 161.94366 * 7 2 1 10 10 C 1.40919 * 120.12928 * 150.16001 * 9 7 2 11 11 C 1.36391 * 120.08655 * 180.29529 * 10 9 7 12 12 C 1.39358 * 120.35567 * 359.45507 * 11 10 9 13 13 N 1.39008 * 119.87566 * 180.27735 * 12 11 10 14 14 C 1.40262 * 120.24841 * 0.30110 * 12 11 10 15 15 N 1.39871 * 120.04749 * 180.02562 * 14 12 11 16 16 N 1.36594 * 120.00125 * 179.97438 * 15 14 12 17 17 C 1.37861 * 119.90636 * 359.97309 * 14 12 11 18 18 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 19 19 H 1.07995 * 119.95536 * 0.04720 * 10 9 7 20 20 H 1.08003 * 119.81997 * 179.73125 * 11 10 9 21 21 H 0.97000 * 119.99932 * 0.02562 * 13 12 11 22 22 H 0.97003 * 119.99608 * 180.02562 * 13 12 11 23 23 H 0.96998 * 119.99888 * 359.97438 * 15 14 12 24 24 H 1.00905 * 110.99824 * 56.04370 * 16 15 14 25 25 H 1.00905 * 111.00082 * 179.97438 * 16 15 14 26 26 H 1.08004 * 120.17165 * 179.97438 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3759 2.1128 -1.3938 5 1 1.5027 2.6168 0.8116 6 1 3.5934 1.4098 0.5821 7 6 2.0085 -1.2109 -0.0005 8 1 1.5083 -2.1233 0.2890 9 6 3.3674 -1.2408 -0.3793 10 6 4.2340 -2.2064 0.1708 11 6 5.5487 -2.2307 -0.1913 12 6 6.0420 -1.3106 -1.1145 13 7 7.3825 -1.3481 -1.4808 14 6 5.1913 -0.3466 -1.6750 15 7 5.6908 0.5745 -2.6015 16 7 4.8613 1.5126 -3.1472 17 6 3.8618 -0.3089 -1.3122 18 1 -0.4850 0.8401 0.0004 19 1 3.8574 -2.9254 0.8832 20 1 6.2100 -2.9698 0.2363 21 1 7.9724 -2.0141 -1.0943 22 1 7.7278 -0.7083 -2.1229 23 1 6.6262 0.5471 -2.8566 24 1 4.4134 2.0611 -2.4284 25 1 5.3605 2.1040 -3.7946 26 1 3.2030 0.4319 -1.7408 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307128455.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 29.424343 kcal Electronic energy + Delta-G solvation = -11880.570210 eV Core-core repulsion = 9765.579363 eV Total energy + Delta-G solvation = -2114.990847 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25020 -37.27668 -35.95595 -34.34115 -31.45960 -30.66525 -27.96550 -25.86349 -23.01446 -21.92050 -19.87961 -18.37882 -18.17117 -17.04393 -16.73022 -16.40597 -15.77196 -14.99442 -14.50423 -14.17251 -14.06639 -13.84845 -13.02679 -12.53438 -12.31569 -12.14270 -11.82571 -11.48738 -11.10032 -10.63561 -9.87148 -8.73341 -8.65425 -7.59176 -6.12438 1.03052 1.05283 1.29445 1.49580 1.55228 2.22588 2.31838 2.77537 3.47287 3.68786 4.27495 4.34993 4.82957 4.94543 5.07666 5.39678 5.41714 5.57435 5.79871 5.87850 6.02781 6.34419 6.46506 6.73734 6.83673 7.02348 7.23497 7.37793 7.55601 8.37098 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.016451 C = 0.012398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.306544 B = 1701.593793 C = 2257.795745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.040 3.960 3 Si 0.973 3.027 4 H -0.250 1.250 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.490 4.490 8 H 0.048 0.952 9 C 0.060 3.940 10 C -0.223 4.223 11 C -0.119 4.119 12 C 0.058 3.942 13 N -0.878 5.878 14 C 0.174 3.826 15 N -0.602 5.602 16 N -0.610 5.610 17 C -0.261 4.261 18 H 0.287 0.713 19 H 0.097 0.903 20 H 0.130 0.870 21 H 0.401 0.599 22 H 0.390 0.610 23 H 0.405 0.595 24 H 0.322 0.678 25 H 0.366 0.634 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.646 4.281 -3.911 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.171 4.171 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.056 3.944 10 C -0.245 4.245 11 C -0.142 4.142 12 C -0.046 4.046 13 N -0.425 5.425 14 C 0.071 3.929 15 N -0.333 5.333 16 N -0.237 5.237 17 C -0.286 4.286 18 H 0.097 0.903 19 H 0.115 0.885 20 H 0.148 0.852 21 H 0.230 0.770 22 H 0.218 0.782 23 H 0.244 0.756 24 H 0.136 0.864 25 H 0.182 0.818 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.770 3.859 -4.236 13.997 hybrid contribution 0.769 1.194 0.388 1.472 sum 13.539 5.053 -3.848 14.955 Atomic orbital electron populations 1.69804 1.09117 1.30684 1.40326 1.26790 0.95311 1.04203 0.90791 0.85405 0.78955 0.76592 0.79289 1.17514 1.21557 1.18496 1.19292 0.94868 0.95213 1.42801 0.93362 1.17560 0.92626 0.92868 0.91321 1.20615 0.93854 1.04229 1.05800 1.20036 0.95257 0.99517 0.99375 1.16922 0.85983 0.99134 1.02531 1.41439 1.05901 1.41558 1.53624 1.17035 0.92207 0.91310 0.92347 1.42707 1.09091 1.31523 1.49954 1.60092 1.28153 1.17534 1.17959 1.20392 0.94499 1.07194 1.06487 0.90326 0.88526 0.85194 0.77029 0.78238 0.75576 0.86352 0.81814 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.27 13.93 21.81 0.30 -50.96 15 2 C 0.04 2.29 5.40 85.21 0.46 2.75 15 3 Si 0.97 45.51 24.45 68.60 1.68 47.19 15 4 H -0.25 -10.73 6.28 99.48 0.62 -10.11 15 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.26 -12.49 6.86 99.48 0.68 -11.81 15 7 C -0.49 -29.54 9.55 23.36 0.22 -29.31 15 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 15 9 C 0.06 3.26 5.10 -21.29 -0.11 3.15 15 10 C -0.22 -10.78 9.73 22.50 0.22 -10.57 15 11 C -0.12 -4.77 9.80 22.11 0.22 -4.55 15 12 C 0.06 2.19 6.79 38.77 0.26 2.45 15 13 N -0.88 -22.90 9.04 -50.67 -0.46 -23.36 15 14 C 0.17 7.25 6.72 38.26 0.26 7.51 15 15 N -0.60 -19.43 6.65 -51.04 -0.34 -19.77 15 16 N -0.61 -18.62 9.59 37.02 0.36 -18.26 15 17 C -0.26 -12.96 6.45 22.81 0.15 -12.81 15 18 H 0.29 15.25 8.30 -92.71 -0.77 14.48 15 19 H 0.10 4.54 8.06 -2.91 -0.02 4.52 15 20 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15 21 H 0.40 8.55 8.83 -92.71 -0.82 7.73 15 22 H 0.39 8.28 6.98 -92.71 -0.65 7.64 15 23 H 0.40 9.92 6.99 -215.50 -1.51 8.42 15 24 H 0.32 10.50 7.94 -210.55 -1.67 8.82 15 25 H 0.37 7.66 9.21 -210.55 -1.94 5.72 15 26 H 0.10 5.18 3.71 -2.91 -0.01 5.17 15 Total: -1.00 -68.51 219.57 -2.20 -70.72 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: -5.42 Total: 35.83 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 1.68 Total: -41.38 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -0.14 Total: -112.36 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.68 Total: 47.19 kcal Total: -68.51 -2.20 -70.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307128455.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.143 kcal (2) G-P(sol) polarization free energy of solvation -68.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds