Wall clock time and date at job start Mon Mar 30 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30923 * 1 3 3 Si 1.86810 * 119.99747 * 2 1 4 4 H 1.48492 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46972 * 299.99834 * 3 2 1 6 6 H 1.48503 * 109.46994 * 59.99769 * 3 2 1 7 7 C 1.39826 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99862 * 198.00053 * 7 2 1 9 9 C 1.41116 * 119.99826 * 18.00540 * 7 2 1 10 10 C 1.40919 * 120.12419 * 204.62538 * 9 7 2 11 11 C 1.36394 * 120.08801 * 180.25178 * 10 9 7 12 12 C 1.39358 * 120.34906 * 359.45315 * 11 10 9 13 13 N 1.39014 * 119.87014 * 180.30010 * 12 11 10 14 14 N 1.36597 * 120.00200 * 0.24954 * 13 12 11 15 15 C 1.40261 * 120.25365 * 0.55031 * 12 11 10 16 16 N 1.39873 * 120.04761 * 179.75102 * 15 12 11 17 17 C 1.37861 * 119.90365 * 359.72923 * 15 12 11 18 18 H 0.96994 * 120.00220 * 0.02562 * 1 2 3 19 19 H 1.08006 * 119.95450 * 359.97438 * 10 9 7 20 20 H 1.07994 * 119.82524 * 179.72586 * 11 10 9 21 21 H 0.97006 * 119.99472 * 180.24333 * 13 12 11 22 22 H 1.00898 * 110.99822 * 179.97438 * 14 13 12 23 23 H 1.00902 * 110.99808 * 303.95167 * 14 13 12 24 24 H 0.97001 * 119.99545 * 179.97438 * 16 15 12 25 25 H 0.96994 * 119.99864 * 359.97438 * 16 15 12 26 26 H 1.07994 * 120.17280 * 179.97438 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6179 0.0000 4 1 3.7031 1.3466 0.0006 5 1 1.8844 2.3965 -1.2125 6 1 1.8844 2.3966 1.2125 7 6 2.0084 -1.2109 0.0005 8 1 3.0488 -1.2336 0.2896 9 6 1.3547 -2.4032 -0.3767 10 6 1.8272 -3.6466 0.0888 11 6 1.1979 -4.7990 -0.2804 12 6 0.0787 -4.7555 -1.1096 13 7 -0.5588 -5.9357 -1.4746 14 7 -0.0909 -7.1346 -1.0166 15 6 -0.4039 -3.5259 -1.5814 16 7 -1.5246 -3.4877 -2.4176 17 6 0.2275 -2.3551 -1.2194 18 1 -0.4850 0.8400 -0.0004 19 1 2.6916 -3.6873 0.7352 20 1 1.5663 -5.7498 0.0752 21 1 -1.3359 -5.9078 -2.0546 22 1 -0.6524 -7.8980 -1.3631 23 1 0.8803 -7.2603 -1.2595 24 1 -1.8579 -2.6370 -2.7431 25 1 -1.9682 -4.3119 -2.6719 26 1 -0.1402 -1.4061 -1.5804 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307191558.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:12 Heat of formation + Delta-G solvation = 52.315095 kcal Electronic energy + Delta-G solvation = -11664.177899 eV Core-core repulsion = 9550.179669 eV Total energy + Delta-G solvation = -2113.998229 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.22087 -35.57388 -33.78629 -32.64138 -29.45760 -27.56003 -26.87125 -23.93441 -20.76474 -20.15859 -17.63644 -16.82021 -16.15973 -15.36783 -14.97345 -14.30504 -14.07646 -12.81360 -12.53336 -12.36918 -12.03358 -11.45034 -11.03904 -10.87573 -10.60727 -10.35437 -9.62165 -9.48935 -9.35599 -8.83280 -7.92027 -6.67721 -6.57053 -5.75455 -3.98785 2.96318 3.18095 3.24144 3.30263 3.44203 3.98180 4.09476 4.83751 5.00748 5.73585 5.94231 6.39464 6.90146 6.90548 7.19026 7.29167 7.44203 7.49915 7.72596 7.91022 8.12720 8.26671 8.55765 8.70230 8.78785 9.00442 9.15041 9.15405 9.27739 10.41937 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.065753 B = 0.010343 C = 0.009163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.735036 B = 2706.613813 C = 3055.125356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.076 3.924 3 Si 0.901 3.099 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.110 3.890 10 C -0.228 4.228 11 C -0.111 4.111 12 C 0.036 3.964 13 N -0.620 5.620 14 N -0.595 5.595 15 C 0.164 3.836 16 N -0.896 5.896 17 C -0.198 4.198 18 H 0.274 0.726 19 H 0.089 0.911 20 H 0.094 0.906 21 H 0.380 0.620 22 H 0.335 0.665 23 H 0.316 0.684 24 H 0.388 0.612 25 H 0.374 0.626 26 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 -5.070 -4.273 6.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.496 4.496 8 H 0.092 0.908 9 C 0.106 3.894 10 C -0.249 4.249 11 C -0.133 4.133 12 C -0.063 4.063 13 N -0.353 5.353 14 N -0.218 5.218 15 C 0.061 3.939 16 N -0.440 5.440 17 C -0.222 4.222 18 H 0.085 0.915 19 H 0.108 0.892 20 H 0.112 0.888 21 H 0.216 0.784 22 H 0.146 0.854 23 H 0.130 0.870 24 H 0.215 0.785 25 H 0.199 0.801 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.687 -4.708 -3.365 6.028 hybrid contribution -0.166 0.418 -1.414 1.483 sum -1.853 -4.290 -4.778 6.684 Atomic orbital electron populations 1.69910 1.07351 1.28287 1.37449 1.25805 0.94626 1.00836 0.92676 0.86395 0.81083 0.81698 0.78238 1.18599 1.20058 1.20313 1.19407 0.98005 0.91351 1.40797 0.90818 1.17267 0.91078 0.91946 0.89088 1.20460 1.04362 0.92504 1.07602 1.19634 0.96270 0.97217 1.00210 1.16688 0.99268 0.82266 1.08041 1.42330 1.34657 0.98859 1.59460 1.60271 1.05948 0.95235 1.60344 1.17256 0.89480 0.92492 0.94655 1.42079 1.34220 1.08804 1.58895 1.20601 1.01682 0.94592 1.05332 0.91548 0.89243 0.88790 0.78415 0.85450 0.87013 0.78470 0.80088 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.53 10.96 55.54 0.61 -20.92 15 2 C 0.08 1.98 5.13 -17.35 -0.09 1.90 15 3 Si 0.90 19.40 29.60 -169.99 -5.03 14.36 15 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.46 -12.83 9.03 -37.90 -0.34 -13.17 15 8 H 0.07 1.97 7.91 -52.49 -0.41 1.55 15 9 C 0.11 3.04 5.57 -106.81 -0.60 2.45 15 10 C -0.23 -5.87 9.73 -39.23 -0.38 -6.25 15 11 C -0.11 -2.63 9.27 -39.83 -0.37 -3.00 15 12 C 0.04 0.81 6.73 -83.43 -0.56 0.25 15 13 N -0.62 -11.33 6.61 32.63 0.22 -11.11 15 14 N -0.60 -9.27 9.58 60.35 0.58 -8.70 15 15 C 0.16 3.84 6.77 -83.57 -0.57 3.27 15 16 N -0.90 -16.64 9.08 32.51 0.30 -16.35 15 17 C -0.20 -5.23 8.52 -38.74 -0.33 -5.56 15 18 H 0.27 6.70 8.30 -40.82 -0.34 6.36 15 19 H 0.09 2.19 8.06 -52.48 -0.42 1.76 15 20 H 0.09 2.04 6.99 -52.49 -0.37 1.67 15 21 H 0.38 6.05 6.98 -185.15 -1.29 4.76 15 22 H 0.33 3.94 9.21 -181.37 -1.67 2.27 15 23 H 0.32 4.73 8.40 -181.36 -1.52 3.21 15 24 H 0.39 6.77 8.84 -40.82 -0.36 6.40 15 25 H 0.37 5.82 6.99 -40.82 -0.29 5.54 15 26 H 0.12 3.28 6.17 -52.49 -0.32 2.96 15 LS Contribution 225.72 15.07 3.40 3.40 Total: -1.00 -30.08 225.72 -8.96 -39.04 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -5.79 Total: 20.39 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -3.23 Total: -20.12 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 1.70 Total: -57.07 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.08 -8.96 -39.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307191558.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.354 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds