Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48507 * 109.47157 * 240.00153 * 3 2 1 5 5 H 1.48504 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47255 * 119.99857 * 3 2 1 7 7 C 1.38815 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99648 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46804 * 179.97438 * 10 9 7 12 12 C 1.38289 * 119.96864 * 269.97669 * 11 10 9 13 13 C 1.38240 * 120.10976 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.05836 * 359.67645 * 13 12 11 15 15 C 1.38709 * 119.93612 * 0.62068 * 14 13 12 16 16 O 1.35905 * 120.05346 * 179.68169 * 15 14 13 17 17 C 1.38116 * 119.97322 * 90.00002 * 11 10 9 18 18 H 0.96996 * 120.00075 * 0.02562 * 1 2 3 19 19 H 0.96996 * 120.00371 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47626 * 59.99528 * 10 9 7 21 21 H 1.09000 * 109.47168 * 299.99070 * 10 9 7 22 22 H 1.08002 * 119.94362 * 359.97438 * 12 11 10 23 23 H 1.08006 * 119.97243 * 179.97438 * 13 12 11 24 24 H 1.07996 * 120.03053 * 180.29714 * 14 13 12 25 25 H 0.96705 * 113.99576 * 269.72355 * 16 15 14 26 26 H 1.08003 * 120.03068 * 0.02562 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 0.0012 12 6 0.6306 -5.3273 1.1995 13 6 -0.2673 -6.3784 1.2034 14 6 -0.7245 -6.9026 0.0096 15 6 -0.2718 -6.3817 -1.1937 16 8 -0.7150 -6.8997 -2.3693 17 6 0.6298 -5.3270 -1.1950 18 1 -0.4850 0.8400 -0.0004 19 1 0.3555 -2.3881 0.0005 20 1 2.6848 -3.7145 0.8905 21 1 2.6846 -3.7146 -0.8895 22 1 0.9834 -4.9161 2.1337 23 1 -0.6155 -6.7871 2.1406 24 1 -1.4297 -7.7206 0.0132 25 1 -0.1718 -7.6237 -2.7097 26 1 0.9806 -4.9171 -2.1306 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307236484.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = -10.166971 kcal Electronic energy + Delta-G solvation = -11290.020266 eV Core-core repulsion = 9141.019860 eV Total energy + Delta-G solvation = -2149.000406 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.46502 -36.75750 -34.48741 -31.88639 -29.93637 -29.27542 -25.51426 -22.79959 -22.27638 -20.84110 -17.93187 -16.99867 -16.10804 -15.44318 -14.99538 -14.53897 -13.70590 -13.31775 -13.28637 -12.50706 -12.15239 -11.92214 -11.41743 -11.13600 -10.92273 -10.77971 -10.26621 -10.00222 -9.75458 -8.88496 -8.56456 -8.31531 -6.93054 -5.74757 -3.04933 1.52382 1.61955 3.45334 3.49151 3.50776 3.90672 4.37410 4.63296 5.15373 5.19648 5.46204 5.56610 5.65865 5.81536 6.02247 6.18282 6.24526 6.47877 6.58809 6.65460 6.68639 7.06102 7.13727 7.69394 7.81644 8.42859 9.54184 10.10440 10.46338 11.47768 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.062872 B = 0.007837 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.240830 B = 3572.160316 C = 3689.378961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.186 3.814 11 C -0.060 4.060 12 C -0.112 4.112 13 C -0.110 4.110 14 C -0.154 4.154 15 C 0.095 3.905 16 O -0.500 6.500 17 C -0.128 4.128 18 H 0.256 0.744 19 H 0.386 0.614 20 H 0.030 0.970 21 H 0.028 0.972 22 H 0.125 0.875 23 H 0.122 0.878 24 H 0.122 0.878 25 H 0.384 0.616 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -13.865 -0.100 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.059 3.941 11 C -0.061 4.061 12 C -0.131 4.131 13 C -0.128 4.128 14 C -0.173 4.173 15 C 0.051 3.949 16 O -0.310 6.310 17 C -0.147 4.147 18 H 0.066 0.934 19 H 0.220 0.780 20 H 0.048 0.952 21 H 0.046 0.954 22 H 0.143 0.857 23 H 0.140 0.860 24 H 0.140 0.860 25 H 0.239 0.761 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.831 -13.296 -0.044 13.322 hybrid contribution 0.402 0.591 -0.100 0.722 sum 1.234 -12.706 -0.144 12.766 Atomic orbital electron populations 1.69667 1.05168 1.25849 1.57313 1.24766 0.95523 0.97724 1.02812 0.86235 0.78486 0.83387 0.77860 1.21214 1.21657 1.21209 1.19205 0.91040 0.83972 1.43280 0.91082 1.42341 1.05977 0.99286 1.89534 1.19696 0.91793 0.83852 0.98771 1.20204 0.97441 0.96217 0.92239 1.21164 0.97647 0.96098 0.98195 1.20978 0.97542 0.96919 0.97384 1.21292 1.02046 1.01833 0.92119 1.18462 0.96004 0.95491 0.84989 1.84850 1.54943 1.54469 1.36723 1.21385 0.97398 0.97011 0.98947 0.93383 0.78023 0.95241 0.95396 0.85699 0.85965 0.86042 0.76122 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.06 55.49 0.72 -28.20 15 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 15 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 15 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 7 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 15 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 15 9 N -0.73 -19.18 5.59 -61.08 -0.34 -19.52 15 10 C 0.19 3.91 6.38 -5.19 -0.03 3.88 15 11 C -0.06 -1.11 5.25 -104.64 -0.55 -1.65 15 12 C -0.11 -1.84 9.70 -39.56 -0.38 -2.22 15 13 C -0.11 -1.56 10.04 -39.60 -0.40 -1.95 15 14 C -0.15 -2.17 9.99 -39.43 -0.39 -2.57 15 15 C 0.09 1.46 6.70 -39.22 -0.26 1.20 15 16 O -0.50 -6.82 13.50 -19.44 -0.26 -7.08 15 17 C -0.13 -2.22 9.64 -39.43 -0.38 -2.60 15 18 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 19 H 0.39 10.91 7.66 -40.82 -0.31 10.60 15 20 H 0.03 0.61 8.08 -51.93 -0.42 0.19 15 21 H 0.03 0.58 8.09 -51.93 -0.42 0.16 15 22 H 0.13 1.94 8.06 -52.49 -0.42 1.52 15 23 H 0.12 1.38 8.06 -52.48 -0.42 0.95 15 24 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 25 H 0.38 3.09 9.06 45.56 0.41 3.50 15 26 H 0.13 2.18 8.06 -52.48 -0.42 1.76 15 LS Contribution 237.49 15.07 3.58 3.58 Total: -1.00 -32.60 237.49 -5.95 -38.55 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -1.98 Total: 8.54 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.65 Total: -13.50 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.38 Total: -47.72 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.26 Total: -7.08 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.60 -5.95 -38.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307236484.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.383 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds