Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48507 * 109.47157 * 240.00153 * 3 2 1 5 5 H 1.48504 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47255 * 119.99857 * 3 2 1 7 7 C 1.38815 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99648 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46804 * 179.97438 * 10 9 7 12 12 C 1.38289 * 119.96864 * 269.97669 * 11 10 9 13 13 C 1.38240 * 120.10976 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.05836 * 359.67645 * 13 12 11 15 15 C 1.38709 * 119.93612 * 0.62068 * 14 13 12 16 16 O 1.35905 * 120.05346 * 179.68169 * 15 14 13 17 17 C 1.38116 * 119.97322 * 90.00002 * 11 10 9 18 18 H 0.96996 * 120.00075 * 0.02562 * 1 2 3 19 19 H 0.96996 * 120.00371 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47626 * 59.99528 * 10 9 7 21 21 H 1.09000 * 109.47168 * 299.99070 * 10 9 7 22 22 H 1.08002 * 119.94362 * 359.97438 * 12 11 10 23 23 H 1.08006 * 119.97243 * 179.97438 * 13 12 11 24 24 H 1.07996 * 120.03053 * 180.29714 * 14 13 12 25 25 H 0.96705 * 113.99576 * 269.72355 * 16 15 14 26 26 H 1.08003 * 120.03068 * 0.02562 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 0.0012 12 6 0.6306 -5.3273 1.1995 13 6 -0.2673 -6.3784 1.2034 14 6 -0.7245 -6.9026 0.0096 15 6 -0.2718 -6.3817 -1.1937 16 8 -0.7150 -6.8997 -2.3693 17 6 0.6298 -5.3270 -1.1950 18 1 -0.4850 0.8400 -0.0004 19 1 0.3555 -2.3881 0.0005 20 1 2.6848 -3.7145 0.8905 21 1 2.6846 -3.7146 -0.8895 22 1 0.9834 -4.9161 2.1337 23 1 -0.6155 -6.7871 2.1406 24 1 -1.4297 -7.7206 0.0132 25 1 -0.1718 -7.6237 -2.7097 26 1 0.9806 -4.9171 -2.1306 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307236484.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = -33.949750 kcal Electronic energy + Delta-G solvation = -11291.051564 eV Core-core repulsion = 9141.019860 eV Total energy + Delta-G solvation = -2150.031705 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.66691 -37.99002 -36.31170 -33.69658 -31.53189 -30.61274 -27.29904 -24.71440 -23.47562 -22.22077 -19.50701 -18.71870 -17.31528 -16.70708 -16.67910 -16.08073 -15.40049 -15.13878 -14.68718 -14.05205 -13.70105 -13.27499 -12.91259 -12.80056 -12.61727 -12.39059 -12.16367 -11.88693 -11.31355 -10.98905 -9.81947 -9.53449 -9.05855 -7.96748 -5.28018 0.31658 0.39413 1.46909 1.50932 1.57181 2.53464 2.73916 3.28618 3.36880 3.92457 4.00930 4.21106 4.24920 4.43147 4.55169 4.76356 4.87642 5.04050 5.10374 5.45480 5.46399 5.47619 5.74581 5.94825 6.23456 6.89289 7.29798 8.02092 8.27782 9.26724 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.062872 B = 0.007837 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.240830 B = 3572.160316 C = 3689.378961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.075 4.075 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.253 4.253 8 H 0.080 0.920 9 N -0.741 5.741 10 C 0.187 3.813 11 C -0.081 4.081 12 C -0.125 4.125 13 C -0.101 4.101 14 C -0.148 4.148 15 C 0.097 3.903 16 O -0.509 6.509 17 C -0.148 4.148 18 H 0.252 0.748 19 H 0.372 0.628 20 H 0.036 0.964 21 H 0.029 0.971 22 H 0.127 0.873 23 H 0.158 0.842 24 H 0.153 0.847 25 H 0.409 0.591 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 -15.050 0.278 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.384 4.384 8 H 0.098 0.902 9 N -0.383 5.383 10 C 0.061 3.939 11 C -0.082 4.082 12 C -0.144 4.144 13 C -0.118 4.118 14 C -0.167 4.167 15 C 0.052 3.948 16 O -0.322 6.322 17 C -0.167 4.167 18 H 0.061 0.939 19 H 0.204 0.796 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.145 0.855 23 H 0.175 0.825 24 H 0.171 0.829 25 H 0.268 0.732 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.968 -14.533 0.324 14.569 hybrid contribution 0.367 0.805 -0.254 0.920 sum 1.335 -13.729 0.070 13.793 Atomic orbital electron populations 1.69841 1.06874 1.26345 1.59138 1.25659 0.96408 1.01372 1.03261 0.85121 0.77129 0.78582 0.78355 1.20228 1.22094 1.20028 1.19670 0.91679 0.85095 1.41934 0.90219 1.42551 1.05526 1.00691 1.89541 1.19765 0.92360 0.83054 0.98740 1.19991 0.98336 0.96241 0.93622 1.21298 0.98509 0.97100 0.97489 1.21345 0.95966 0.95494 0.99044 1.21659 1.01660 1.02030 0.91301 1.18530 0.95102 0.94914 0.86221 1.84783 1.55568 1.55636 1.36193 1.21399 0.98793 0.98319 0.98220 0.93881 0.79615 0.94596 0.95337 0.85465 0.82481 0.82920 0.73196 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.40 13.06 21.65 0.28 -61.12 15 2 C -0.07 -4.41 5.50 84.86 0.47 -3.94 15 3 Si 0.98 46.80 29.55 68.60 2.03 48.82 15 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 15 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 7 C -0.25 -14.55 9.99 84.03 0.84 -13.71 15 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 15 9 N -0.74 -39.81 5.59 -347.16 -1.94 -41.76 15 10 C 0.19 7.97 6.38 85.64 0.55 8.51 15 11 C -0.08 -2.98 5.25 -19.88 -0.10 -3.08 15 12 C -0.13 -3.97 9.70 22.28 0.22 -3.75 15 13 C -0.10 -2.55 10.04 22.25 0.22 -2.33 15 14 C -0.15 -3.70 9.99 22.37 0.22 -3.47 15 15 C 0.10 2.81 6.70 22.51 0.15 2.96 15 16 O -0.51 -12.73 13.50 -92.48 -1.25 -13.98 15 17 C -0.15 -5.10 9.64 22.36 0.22 -4.88 15 18 H 0.25 15.40 8.31 -92.71 -0.77 14.63 15 19 H 0.37 21.66 7.66 -92.71 -0.71 20.95 15 20 H 0.04 1.48 8.08 -2.39 -0.02 1.46 15 21 H 0.03 1.21 8.09 -2.39 -0.02 1.19 15 22 H 0.13 3.86 8.06 -2.91 -0.02 3.84 15 23 H 0.16 2.86 8.06 -2.91 -0.02 2.84 15 24 H 0.15 2.87 8.06 -2.91 -0.02 2.85 15 25 H 0.41 5.54 9.06 -74.05 -0.67 4.86 15 26 H 0.12 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -69.59 237.49 1.71 -67.88 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.19 Total: 23.85 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 2.78 Total: -23.69 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -1.66 Total: -102.88 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.25 Total: -13.98 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -69.59 1.71 -67.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307236484.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.928 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds