Wall clock time and date at job start Mon Mar 30 2020 02:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30963 * 1 3 3 Si 1.86803 * 120.00315 * 2 1 4 4 H 1.48502 * 109.47026 * 85.18745 * 3 2 1 5 5 H 1.48497 * 109.47389 * 205.19242 * 3 2 1 6 6 H 1.48496 * 109.46926 * 325.19225 * 3 2 1 7 7 C 1.39843 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99942 * 196.79870 * 7 2 1 9 9 C 1.40890 * 119.99693 * 16.80303 * 7 2 1 10 10 C 1.40837 * 120.21839 * 26.09247 * 9 7 2 11 11 C 1.36214 * 120.02911 * 179.76306 * 10 9 7 12 12 C 1.39784 * 120.47998 * 0.51536 * 11 10 9 13 13 N 1.38959 * 119.78070 * 179.71410 * 12 11 10 14 14 C 1.39068 * 120.44200 * 359.74257 * 12 11 10 15 15 C 1.38334 * 119.95658 * 359.97438 * 14 12 11 16 16 N 1.38839 * 120.23839 * 179.97438 * 15 14 12 17 17 N 1.36601 * 120.00344 * 0.02562 * 16 15 14 18 18 H 0.96998 * 119.99936 * 0.02562 * 1 2 3 19 19 H 1.07995 * 119.98928 * 0.02562 * 10 9 7 20 20 H 1.07994 * 119.75961 * 180.26072 * 11 10 9 21 21 H 0.96993 * 120.00560 * 180.02562 * 13 12 11 22 22 H 0.97009 * 119.99745 * 0.02705 * 13 12 11 23 23 H 1.07997 * 120.02551 * 180.02562 * 14 12 11 24 24 H 0.97006 * 119.99808 * 180.02562 * 16 15 14 25 25 H 1.00894 * 111.00143 * 180.02562 * 17 16 15 26 26 H 1.00903 * 110.99642 * 303.95946 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 2.3895 2.1051 1.3952 5 1 3.5884 1.4129 -0.5959 6 1 1.4957 2.6212 -0.7992 7 6 2.0088 -1.2111 0.0005 8 1 3.0542 -1.2309 0.2708 9 6 1.3494 -2.4053 -0.3517 10 6 0.2254 -2.3708 -1.1995 11 6 -0.4063 -3.5282 -1.5414 12 6 0.0460 -4.7553 -1.0479 13 7 -0.6129 -5.9266 -1.4014 14 6 1.1508 -4.8118 -0.2051 15 6 1.8095 -3.6482 0.1492 16 7 2.9127 -3.6977 0.9907 17 7 3.3517 -4.8986 1.4715 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1334 -1.4268 -1.5822 20 1 -1.2653 -3.4971 -2.1952 21 1 -0.3021 -6.7798 -1.0605 22 1 -1.3839 -5.8909 -1.9891 23 1 1.4947 -5.7636 0.1720 24 1 3.3718 -2.8795 1.2372 25 1 4.1571 -4.7771 2.0669 26 1 2.6132 -5.3852 1.9574 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307452033.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:26 Heat of formation + Delta-G solvation = 26.787108 kcal Electronic energy + Delta-G solvation = -11731.430767 eV Core-core repulsion = 9616.325561 eV Total energy + Delta-G solvation = -2115.105206 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.91557 -37.27512 -35.92337 -33.77751 -31.23289 -30.11194 -27.83363 -25.84506 -22.60777 -22.02176 -19.05280 -18.66757 -17.82434 -16.90261 -16.56805 -16.05578 -15.64537 -14.74184 -14.25756 -14.09396 -13.68846 -13.37564 -12.82490 -12.68325 -12.48996 -12.17200 -11.48365 -11.37743 -11.04695 -10.44758 -9.60808 -8.41915 -8.24168 -7.76841 -5.75795 1.22256 1.37712 1.43758 1.55376 1.63778 2.33650 2.62250 2.98587 3.56229 3.95477 4.50676 4.65658 4.82348 5.28185 5.31728 5.51152 5.62234 5.75426 5.98650 6.05506 6.26968 6.42356 6.68708 7.06958 7.10986 7.18651 7.41383 7.48247 7.80929 8.64785 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.038161 B = 0.013405 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.556985 B = 2088.206130 C = 2742.698715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.029 3.971 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.276 1.276 7 C -0.495 4.495 8 H 0.067 0.933 9 C -0.020 4.020 10 C -0.109 4.109 11 C -0.238 4.238 12 C 0.160 3.840 13 N -0.877 5.877 14 C -0.248 4.248 15 C 0.162 3.838 16 N -0.602 5.602 17 N -0.600 5.600 18 H 0.275 0.725 19 H 0.097 0.903 20 H 0.099 0.901 21 H 0.396 0.604 22 H 0.396 0.604 23 H 0.117 0.883 24 H 0.399 0.601 25 H 0.360 0.640 26 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -5.685 1.490 6.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.181 4.181 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.187 1.187 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.085 0.915 9 C -0.026 4.026 10 C -0.131 4.131 11 C -0.263 4.263 12 C 0.057 3.943 13 N -0.419 5.419 14 C -0.276 4.276 15 C 0.059 3.941 16 N -0.328 5.328 17 N -0.226 5.226 18 H 0.086 0.914 19 H 0.115 0.885 20 H 0.117 0.883 21 H 0.224 0.776 22 H 0.224 0.776 23 H 0.135 0.865 24 H 0.238 0.762 25 H 0.174 0.826 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.348 -5.835 0.825 6.344 hybrid contribution -0.050 1.259 1.062 1.648 sum 2.298 -4.577 1.887 5.458 Atomic orbital electron populations 1.69958 1.08520 1.28952 1.40979 1.26419 0.95344 1.03506 0.92822 0.85390 0.79131 0.77589 0.78641 1.19479 1.18697 1.20106 1.19127 0.96877 0.92250 1.44552 0.91534 1.17280 0.96731 0.91228 0.97379 1.20525 0.97886 0.96374 0.98312 1.20006 1.04629 0.92064 1.09554 1.17281 0.93318 0.86881 0.96848 1.41807 1.36383 1.05174 1.58585 1.19658 1.01532 0.96443 1.09979 1.17717 0.89250 0.93703 0.93402 1.42804 1.34054 1.03278 1.52712 1.60123 1.09568 1.08415 1.44460 0.91447 0.88521 0.88308 0.77577 0.77636 0.86518 0.76233 0.82612 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.30 10.99 21.82 0.24 -47.06 15 2 C 0.03 1.51 5.14 85.21 0.44 1.95 15 3 Si 0.97 40.48 29.59 68.60 2.03 42.51 15 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 5 H -0.26 -10.73 7.11 99.48 0.71 -10.03 15 6 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.50 -27.00 8.47 23.31 0.20 -26.80 15 8 H 0.07 3.43 6.71 -2.91 -0.02 3.41 15 9 C -0.02 -1.08 5.57 -21.14 -0.12 -1.19 15 10 C -0.11 -6.00 8.61 22.43 0.19 -5.81 15 11 C -0.24 -11.50 9.81 22.17 0.22 -11.29 15 12 C 0.16 6.93 6.76 38.59 0.26 7.19 15 13 N -0.88 -28.31 9.05 -51.18 -0.46 -28.77 15 14 C -0.25 -11.06 9.17 22.49 0.21 -10.86 15 15 C 0.16 7.90 6.72 38.90 0.26 8.16 15 16 N -0.60 -24.67 6.56 -50.49 -0.33 -25.00 15 17 N -0.60 -18.95 9.59 37.02 0.35 -18.59 15 18 H 0.28 14.08 8.30 -92.71 -0.77 13.31 15 19 H 0.10 5.62 6.22 -2.91 -0.02 5.60 15 20 H 0.10 4.32 8.06 -2.91 -0.02 4.30 15 21 H 0.40 10.74 8.82 -92.71 -0.82 9.92 15 22 H 0.40 11.06 8.83 -92.70 -0.82 10.24 15 23 H 0.12 4.61 7.02 -2.91 -0.02 4.59 15 24 H 0.40 16.18 7.06 -215.49 -1.52 14.66 15 25 H 0.36 8.68 9.21 -210.56 -1.94 6.74 15 26 H 0.33 9.63 8.42 -210.55 -1.77 7.85 15 Total: -1.00 -63.52 226.00 -2.11 -65.64 By element: Atomic # 1 Polarization: 55.54 SS G_CDS: -5.60 Total: 49.94 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 1.66 Total: -38.65 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -0.20 Total: -119.43 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -63.52 -2.11 -65.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307452033.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.425 kcal (2) G-P(sol) polarization free energy of solvation -63.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds