Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38215 * 120.41903 * 2 1 4 4 N 1.31854 * 120.76332 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.38628 * 120.41518 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.79382 * 359.95301 * 7 2 1 9 9 H 1.09000 * 109.46972 * 325.00021 * 8 7 2 10 10 O 1.42897 * 109.47229 * 205.00419 * 8 7 2 11 11 C 1.50694 * 109.47196 * 85.00312 * 8 7 2 12 12 H 1.08004 * 119.99964 * 0.02562 * 11 8 7 13 13 C 1.37870 * 120.00294 * 179.97438 * 11 8 7 14 14 N 1.31523 * 120.00078 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00447 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.46866 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47390 * 120.00044 * 15 13 11 18 18 H 1.48497 * 109.47107 * 240.00255 * 15 13 11 19 19 H 1.08998 * 109.46832 * 89.99626 * 1 2 3 20 20 H 1.09003 * 109.47259 * 209.99666 * 1 2 3 21 21 H 1.08995 * 109.47077 * 329.99593 * 1 2 3 22 22 H 1.07994 * 119.62230 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 24 24 H 1.07996 * 120.41523 * 180.02562 * 6 5 4 25 25 H 0.96710 * 114.00143 * 299.99852 * 10 8 7 26 26 H 0.96999 * 120.00219 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2257 0.0822 -0.0015 6 6 3.5948 -1.1472 -0.0026 7 6 2.2089 -1.1955 -0.0005 8 6 1.4831 -2.5162 -0.0001 9 1 0.5708 -2.4292 0.5900 10 8 2.3241 -3.5217 0.5688 11 6 1.1317 -2.8968 -1.4152 12 1 1.4069 -2.2475 -2.2332 13 6 0.4599 -4.0744 -1.6658 14 7 0.1253 -4.8654 -0.6698 15 14 0.0237 -4.5459 -3.4200 16 1 0.5065 -3.4936 -4.3499 17 1 0.6673 -5.8404 -3.7593 18 1 -1.4501 -4.6780 -3.5451 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.6676 2.1275 0.0004 23 1 5.3047 0.1285 -0.0023 24 1 4.1738 -2.0588 -0.0031 25 1 3.1561 -3.6536 0.0938 26 1 -0.3470 -5.6941 -0.8461 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307453276.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = -26.862814 kcal Electronic energy + Delta-G solvation = -11846.033855 eV Core-core repulsion = 9696.309463 eV Total energy + Delta-G solvation = -2149.724392 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.68351 -35.93563 -32.96347 -32.27924 -31.03685 -27.28817 -26.51740 -23.75817 -21.66979 -20.55928 -17.17248 -16.27984 -15.95480 -14.76401 -14.41726 -14.01983 -13.71899 -13.03757 -12.78309 -12.61893 -12.13720 -11.74134 -11.27862 -11.08341 -11.02510 -10.80972 -10.29177 -9.62913 -9.05794 -8.79192 -8.54852 -8.39256 -8.17817 -6.14018 -4.33663 1.72260 2.00304 3.19841 3.28770 3.32888 4.27069 4.45484 4.96253 5.11564 5.38141 5.56605 5.63295 5.67558 5.94628 6.10091 6.23652 6.32174 6.37586 6.67482 6.80685 6.92538 7.35728 7.58341 7.71201 7.97069 8.51473 8.68623 9.18129 9.42350 10.89617 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.045634 B = 0.011902 C = 0.011256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.432601 B = 2351.948359 C = 2487.004733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.136 4.136 3 C 0.084 3.916 4 N -0.505 5.505 5 C 0.079 3.921 6 C -0.170 4.170 7 C -0.033 4.033 8 C 0.257 3.743 9 H 0.077 0.923 10 O -0.560 6.560 11 C -0.562 4.562 12 H 0.058 0.942 13 C 0.081 3.919 14 N -0.857 5.857 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.145 0.855 23 H 0.145 0.855 24 H 0.129 0.871 25 H 0.347 0.653 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 6.354 0.267 6.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.072 4.072 4 N -0.214 5.214 5 C -0.077 4.077 6 C -0.190 4.190 7 C -0.041 4.041 8 C 0.199 3.801 9 H 0.094 0.906 10 O -0.363 6.363 11 C -0.600 4.600 12 H 0.076 0.924 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 H 0.092 0.908 20 H 0.095 0.905 21 H 0.074 0.926 22 H 0.162 0.838 23 H 0.162 0.838 24 H 0.147 0.853 25 H 0.192 0.808 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.330 6.946 0.765 7.366 hybrid contribution -0.216 -1.073 -1.455 1.821 sum 2.114 5.873 -0.690 6.280 Atomic orbital electron populations 1.20666 0.90569 1.02213 1.02704 1.20728 0.97662 0.93446 1.01918 1.22459 0.90029 0.97055 0.97680 1.67544 1.08357 1.31454 1.14056 1.22502 0.99570 0.88105 0.97521 1.21876 0.95239 0.99006 1.02835 1.21789 0.94083 0.98454 0.89749 1.18600 0.88405 0.78370 0.94681 0.90585 1.86624 1.32827 1.60321 1.56504 1.21442 1.39973 1.06656 0.91886 0.92408 1.25036 0.94373 0.96032 0.97151 1.70078 1.37054 1.11471 1.30667 0.86541 0.78297 0.78593 0.84597 1.19631 1.20713 1.20685 0.90842 0.90548 0.92613 0.83810 0.83786 0.85345 0.80833 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.66 36.01 0.35 -1.45 15 2 C -0.14 -2.62 5.90 -104.48 -0.62 -3.23 15 3 C 0.08 1.50 10.86 -17.55 -0.19 1.31 15 4 N -0.50 -9.34 10.36 -13.26 -0.14 -9.48 15 5 C 0.08 1.39 11.18 -17.55 -0.20 1.19 15 6 C -0.17 -3.23 9.38 -39.44 -0.37 -3.60 15 7 C -0.03 -0.69 5.03 -104.32 -0.53 -1.22 15 8 C 0.26 6.32 2.62 -29.04 -0.08 6.25 15 9 H 0.08 2.01 6.30 -51.93 -0.33 1.69 15 10 O -0.56 -14.00 12.40 -35.23 -0.44 -14.44 15 11 C -0.56 -14.85 8.75 -34.45 -0.30 -15.16 15 12 H 0.06 1.55 7.74 -52.48 -0.41 1.14 15 13 C 0.08 2.18 5.40 -17.82 -0.10 2.08 15 14 N -0.86 -24.36 12.84 55.43 0.71 -23.65 15 15 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 15 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 19 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 20 H 0.08 1.43 6.16 -51.93 -0.32 1.11 15 21 H 0.05 0.77 8.09 -51.93 -0.42 0.35 15 22 H 0.14 2.09 8.06 -52.49 -0.42 1.67 15 23 H 0.14 2.03 8.06 -52.49 -0.42 1.60 15 24 H 0.13 2.22 6.54 -52.49 -0.34 1.87 15 25 H 0.35 7.60 7.41 45.56 0.34 7.94 15 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 230.05 15.07 3.47 3.47 Total: -1.00 -30.02 230.05 -5.32 -35.34 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -1.88 Total: 7.02 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.02 Total: -13.83 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.57 Total: -33.13 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.44 Total: -14.44 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.02 -5.32 -35.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453276.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.479 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds