Wall clock time and date at job start Mon Mar 30 2020 01:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35628 * 116.99980 * 2 1 4 4 C 1.39563 * 119.56066 * 180.02562 * 3 2 1 5 5 C 1.38674 * 119.50280 * 180.27700 * 4 3 2 6 6 C 1.50696 * 120.67004 * 179.69281 * 5 4 3 7 7 C 1.38340 * 118.65935 * 359.47881 * 5 4 3 8 8 C 1.40563 * 119.10723 * 0.51576 * 7 5 4 9 9 C 1.41330 * 119.79409 * 179.72565 * 8 7 5 10 10 H 1.07997 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.40038 * 119.99816 * 180.02562 * 9 8 7 12 12 N 1.30738 * 120.00018 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99897 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47001 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47052 * 119.99967 * 13 11 9 16 16 H 1.48500 * 109.47021 * 240.00384 * 13 11 9 17 17 N 1.31792 * 119.56072 * 0.02562 * 3 2 1 18 18 H 1.08997 * 109.46963 * 299.99816 * 1 2 3 19 19 H 1.08994 * 109.47055 * 59.99835 * 1 2 3 20 20 H 1.09001 * 109.46731 * 180.02562 * 1 2 3 21 21 H 1.08002 * 120.24633 * 359.97438 * 4 3 2 22 22 H 1.09001 * 109.46850 * 90.00223 * 6 5 4 23 23 H 1.08997 * 109.47387 * 209.99798 * 6 5 4 24 24 H 1.08997 * 109.47275 * 330.00529 * 6 5 4 25 25 H 1.07998 * 120.44532 * 180.24359 * 7 5 4 26 26 H 0.97000 * 120.00075 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 3.4390 1.2708 -0.0005 5 6 4.0673 2.5070 0.0053 6 6 5.5711 2.6050 0.0118 7 6 3.2858 3.6485 0.0005 8 6 1.8862 3.5189 0.0009 9 6 1.0738 4.6755 0.0019 10 1 1.5288 5.6549 0.0019 11 6 -0.3210 4.5513 0.0029 12 7 -0.8718 3.3656 0.0034 13 14 -1.3948 6.0800 0.0035 14 1 -0.5336 7.2898 0.0034 15 1 -2.2529 6.0825 -1.2084 16 1 -2.2512 6.0828 1.2166 17 7 1.3185 2.3082 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 4.0242 0.3631 -0.0005 22 1 5.9379 2.6313 -1.0143 23 1 5.8737 3.5153 0.5292 24 1 5.9894 1.7392 0.5250 25 1 3.7449 4.6261 0.0008 26 1 -1.8380 3.2796 0.0037 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307537732.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:33 Heat of formation + Delta-G solvation = -35.096767 kcal Electronic energy + Delta-G solvation = -11814.273553 eV Core-core repulsion = 9664.192109 eV Total energy + Delta-G solvation = -2150.081443 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.69487 -38.43772 -35.68560 -33.68598 -31.48475 -28.85554 -27.74258 -26.94697 -23.18423 -22.29405 -19.15235 -18.34196 -16.86605 -16.67015 -16.53670 -16.18996 -14.90530 -14.82098 -14.39634 -13.70228 -13.42263 -13.07941 -12.87406 -12.84719 -12.65648 -12.44390 -12.15714 -11.87565 -11.71670 -10.98934 -9.82307 -9.69018 -9.12759 -8.34596 -6.56732 0.89502 1.11581 1.41047 1.52652 1.56383 2.21823 2.62079 2.80713 3.85576 4.19622 4.42632 4.54164 4.63387 4.64096 4.79421 4.89759 4.91226 5.01310 5.15319 5.21047 5.26687 5.63387 5.92173 6.01624 6.14804 6.55269 6.72632 7.05600 8.04682 8.41170 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.035226 B = 0.014461 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.686415 B = 1935.831136 C = 2710.067750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 O -0.337 6.337 3 C 0.305 3.695 4 C -0.336 4.336 5 C -0.006 4.006 6 C -0.097 4.097 7 C -0.322 4.322 8 C 0.250 3.750 9 C -0.461 4.461 10 H 0.093 0.907 11 C 0.024 3.976 12 N -0.749 5.749 13 Si 0.991 3.009 14 H -0.254 1.254 15 H -0.267 1.267 16 H -0.267 1.267 17 N -0.559 5.559 18 H 0.036 0.964 19 H 0.036 0.964 20 H 0.116 0.884 21 H 0.120 0.880 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -0.134 -0.015 1.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 O -0.245 6.245 3 C 0.120 3.880 4 C -0.359 4.359 5 C -0.011 4.011 6 C -0.153 4.153 7 C -0.344 4.344 8 C 0.125 3.875 9 C -0.492 4.492 10 H 0.111 0.889 11 C -0.198 4.198 12 N -0.371 5.371 13 Si 0.811 3.189 14 H -0.177 1.177 15 H -0.191 1.191 16 H -0.192 1.192 17 N -0.288 5.288 18 H 0.055 0.945 19 H 0.055 0.945 20 H 0.134 0.866 21 H 0.138 0.862 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.132 0.868 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.881 -0.566 -0.012 1.048 hybrid contribution -0.029 0.575 -0.006 0.576 sum 0.852 0.009 -0.018 0.853 Atomic orbital electron populations 1.22590 0.77412 1.02122 1.01223 1.86039 1.23254 1.26323 1.88885 1.20483 0.89848 0.85849 0.91787 1.20433 0.91079 0.98223 1.26177 1.20021 0.97184 0.91453 0.92487 1.20697 0.88613 1.03086 1.02900 1.21713 0.94213 0.97976 1.20525 1.18726 0.90553 0.90340 0.87890 1.20027 0.91960 0.93074 1.44178 0.88909 1.27028 0.99859 1.00546 0.92407 1.70214 1.12124 1.25764 1.29018 0.85033 0.77617 0.77547 0.78722 1.17699 1.19143 1.19156 1.68296 1.37482 0.97425 1.25561 0.94477 0.94474 0.86561 0.86217 0.90164 0.90752 0.90595 0.86818 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.60 10.38 113.37 1.18 3.78 15 2 O -0.34 -16.30 10.47 -89.40 -0.94 -17.24 15 3 C 0.30 16.33 7.50 85.02 0.64 16.96 15 4 C -0.34 -16.23 9.76 22.69 0.22 -16.01 15 5 C -0.01 -0.26 5.91 -19.74 -0.12 -0.38 15 6 C -0.10 -3.10 10.05 71.23 0.72 -2.39 15 7 C -0.32 -16.24 9.53 22.86 0.22 -16.02 15 8 C 0.25 14.21 6.55 40.18 0.26 14.47 15 9 C -0.46 -25.11 9.14 23.47 0.21 -24.90 15 10 H 0.09 4.70 7.85 -2.91 -0.02 4.68 15 11 C 0.02 1.20 5.50 85.29 0.47 1.67 15 12 N -0.75 -39.73 11.46 21.84 0.25 -39.48 15 13 Si 0.99 37.68 29.56 68.60 2.03 39.71 15 14 H -0.25 -9.27 7.11 99.48 0.71 -8.57 15 15 H -0.27 -9.77 7.11 99.48 0.71 -9.06 15 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 15 17 N -0.56 -32.22 6.70 -302.43 -2.02 -34.24 15 18 H 0.04 1.67 8.10 -2.39 -0.02 1.65 15 19 H 0.04 1.67 8.10 -2.39 -0.02 1.65 15 20 H 0.12 3.68 8.14 -2.39 -0.02 3.66 15 21 H 0.12 5.15 8.06 -2.91 -0.02 5.13 15 22 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 23 H 0.07 2.16 8.10 -2.39 -0.02 2.14 15 24 H 0.08 2.15 8.10 -2.39 -0.02 2.13 15 25 H 0.11 5.23 8.06 -2.91 -0.02 5.20 15 26 H 0.28 13.25 8.29 -92.71 -0.77 12.48 15 Total: -1.00 -64.04 234.75 4.28 -59.75 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.17 Total: 14.30 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.80 Total: -22.80 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -1.77 Total: -73.72 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.94 Total: -17.24 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -64.04 4.28 -59.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307537732.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.656 kcal (2) G-P(sol) polarization free energy of solvation -64.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds