Wall clock time and date at job start Mon Mar 30 2020 02:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 O 1.21620 * 119.99889 * 149.94697 * 3 2 1 5 5 N 1.34781 * 120.00373 * 330.22359 * 3 2 1 6 6 C 1.46497 * 120.00087 * 174.91761 * 5 3 2 7 7 C 1.50700 * 109.47039 * 89.99565 * 6 5 3 8 8 H 1.08002 * 120.00548 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99929 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99880 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00207 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47262 * 89.99682 * 11 9 7 13 13 H 1.48498 * 109.47457 * 210.00059 * 11 9 7 14 14 H 1.48505 * 109.47128 * 329.99996 * 11 9 7 15 15 C 1.46494 * 119.99662 * 354.91362 * 5 3 2 16 16 C 1.53002 * 117.50010 * 193.59470 * 15 5 3 17 17 C 1.52997 * 59.99945 * 252.51141 * 16 15 5 18 18 H 4.39219 * 13.43118 * 0.02562 * 4 2 1 19 19 H 1.08994 * 109.47069 * 209.99536 * 6 5 3 20 20 H 1.09000 * 109.47437 * 330.00054 * 6 5 3 21 21 H 0.96998 * 120.00014 * 180.02562 * 10 9 7 22 22 H 1.09005 * 115.55567 * 339.30498 * 15 5 3 23 23 H 1.09000 * 117.49692 * 0.02562 * 16 15 5 24 24 H 1.08995 * 117.49808 * 145.02144 * 16 15 5 25 25 H 1.09000 * 117.49843 * 252.50653 * 17 16 15 26 26 H 1.09005 * 117.51932 * 107.48188 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2137 0.9126 -0.5275 5 7 3.2804 -1.0122 0.5796 6 6 4.7411 -1.0694 0.4833 7 6 5.3506 -0.3314 1.6473 8 1 4.7137 0.1334 2.3854 9 6 6.7215 -0.2505 1.7707 10 7 7.2534 0.3930 2.7868 11 14 7.8233 -1.0550 0.4947 12 1 8.1127 -0.0849 -0.5917 13 1 9.0956 -1.4763 1.1342 14 1 7.1373 -2.2436 -0.0728 15 6 2.5528 -2.0556 1.3061 16 6 3.3667 -2.9909 2.2026 17 6 2.7893 -3.5068 0.8831 18 1 -1.0499 -0.0006 0.0009 19 1 5.0660 -2.1097 0.5023 20 1 5.0622 -0.6054 -0.4493 21 1 8.2178 0.4503 2.8735 22 1 1.5505 -1.7854 1.6386 23 1 4.4435 -2.8295 2.2523 24 1 2.9000 -3.3359 3.1252 25 1 1.9428 -4.1913 0.9376 26 1 3.4860 -3.6851 0.0640 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379337503.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:40 Heat of formation + Delta-G solvation = 34.258332 kcal Electronic energy + Delta-G solvation = -11723.424118 eV Core-core repulsion = 9576.350137 eV Total energy + Delta-G solvation = -2147.073980 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.95570 -38.39296 -35.25071 -34.29769 -33.76902 -30.31497 -25.67560 -24.09051 -23.17800 -22.02668 -19.39499 -19.10585 -17.77840 -17.26809 -16.41434 -15.99197 -15.58105 -15.15087 -14.68990 -13.74486 -13.68892 -12.99441 -12.60305 -12.45894 -12.24485 -11.89066 -11.85319 -11.82450 -11.68517 -11.55797 -11.04586 -10.85532 -9.35532 -8.35951 -6.41542 0.68668 1.29824 1.34822 1.42220 1.50585 2.15819 2.28433 2.58039 2.96658 3.07400 3.33667 3.83813 4.01710 4.16385 4.53204 4.67577 4.82753 4.90545 4.93641 5.15839 5.35159 5.38079 5.47255 6.18723 6.34524 6.47929 6.59084 7.08005 7.23876 8.81140 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.037606 B = 0.012994 C = 0.011210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.388246 B = 2154.355601 C = 2497.070723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.291 4.291 3 C 0.606 3.394 4 O -0.585 6.585 5 N -0.561 5.561 6 C 0.226 3.774 7 C -0.532 4.532 8 H 0.027 0.973 9 C 0.014 3.986 10 N -0.942 5.942 11 Si 0.944 3.056 12 H -0.275 1.275 13 H -0.271 1.271 14 H -0.238 1.238 15 C 0.048 3.952 16 C -0.184 4.184 17 C -0.167 4.167 18 H 0.292 0.708 19 H 0.056 0.944 20 H 0.020 0.980 21 H 0.270 0.730 22 H 0.145 0.855 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.138 0.862 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 -10.007 -4.191 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.294 4.294 3 C 0.396 3.604 4 O -0.467 6.467 5 N -0.288 5.288 6 C 0.104 3.896 7 C -0.570 4.570 8 H 0.045 0.955 9 C -0.184 4.184 10 N -0.582 5.582 11 Si 0.766 3.234 12 H -0.200 1.200 13 H -0.196 1.196 14 H -0.161 1.161 15 C -0.056 4.056 16 C -0.221 4.221 17 C -0.205 4.205 18 H 0.307 0.693 19 H 0.074 0.926 20 H 0.038 0.962 21 H 0.079 0.921 22 H 0.163 0.837 23 H 0.100 0.900 24 H 0.142 0.858 25 H 0.156 0.844 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.559 -9.512 -4.368 16.350 hybrid contribution 1.029 0.391 -0.086 1.104 sum -11.531 -9.121 -4.454 15.362 Atomic orbital electron populations 1.26279 0.95938 0.92644 0.90175 1.21413 0.93107 1.06795 1.08068 1.15471 0.84828 0.81516 0.78598 1.90775 1.70635 1.36627 1.48657 1.47369 1.07458 1.23468 1.50504 1.19397 0.76668 0.97524 0.95962 1.21396 0.92204 1.34650 1.08769 0.95504 1.25815 0.99423 0.95474 0.97704 1.70040 1.12363 1.43692 1.32128 0.85770 0.78605 0.80094 0.78886 1.20035 1.19604 1.16118 1.21988 0.97437 0.84847 1.01297 1.23375 1.00518 1.02182 0.96049 1.23484 1.04248 0.95159 0.97600 0.69299 0.92618 0.96166 0.92133 0.83720 0.90020 0.85772 0.84364 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.66 19.25 74.32 1.43 0.77 15 2 C -0.29 -9.78 11.81 30.01 0.35 -9.43 15 3 C 0.61 28.01 7.51 85.49 0.64 28.65 15 4 O -0.58 -32.77 16.71 -4.09 -0.07 -32.83 15 5 N -0.56 -24.88 2.81 -811.06 -2.28 -27.15 15 6 C 0.23 11.45 3.46 85.63 0.30 11.74 15 7 C -0.53 -32.09 9.47 25.60 0.24 -31.84 15 8 H 0.03 1.83 8.06 -2.91 -0.02 1.80 15 9 C 0.01 0.85 5.47 84.66 0.46 1.31 15 10 N -0.94 -60.24 13.96 21.45 0.30 -59.94 15 11 Si 0.94 44.75 27.47 68.60 1.88 46.63 15 12 H -0.27 -13.10 7.11 99.48 0.71 -12.39 15 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 14 H -0.24 -10.11 6.54 99.48 0.65 -9.45 15 15 C 0.05 1.58 6.06 44.99 0.27 1.85 15 16 C -0.18 -5.74 9.72 30.59 0.30 -5.44 15 17 C -0.17 -4.27 10.02 30.59 0.31 -3.96 15 18 H 0.29 1.71 7.80 -4.42 -0.03 1.68 15 19 H 0.06 2.57 5.31 -2.39 -0.01 2.56 15 20 H 0.02 1.10 6.92 -2.39 -0.02 1.08 15 21 H 0.27 15.95 8.31 -92.71 -0.77 15.18 15 22 H 0.15 3.95 7.11 -2.38 -0.02 3.94 15 23 H 0.08 3.21 6.29 -2.39 -0.02 3.19 15 24 H 0.12 3.11 8.14 -2.39 -0.02 3.09 15 25 H 0.14 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.09 2.38 7.83 -2.38 -0.02 2.36 15 Total: -1.00 -81.00 238.37 5.26 -75.74 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.12 Total: 3.90 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 4.31 Total: -6.34 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -1.98 Total: -87.09 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.07 Total: -32.83 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -81.00 5.26 -75.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379337503.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.999 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds