Wall clock time and date at job start Mon Mar 30 2020 02:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 C 1.38392 * 119.99891 * 124.99899 * 12 11 10 14 14 N 1.32128 * 119.99535 * 179.97438 * 13 12 11 15 15 C 1.32159 * 119.99880 * 359.97438 * 14 13 12 16 16 C 1.38339 * 120.00308 * 0.02562 * 15 14 13 17 17 N 1.32125 * 120.00277 * 304.72580 * 12 11 10 18 18 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 23 23 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 24 24 H 1.07998 * 120.00584 * 359.96041 * 13 12 11 25 25 H 1.08005 * 119.99868 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.00038 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.8175 -6.1247 -0.0029 13 6 1.5681 -7.0682 0.9784 14 7 2.2284 -8.2126 0.9775 15 6 3.1267 -8.4565 0.0392 16 6 3.3759 -7.5134 -0.9417 17 7 2.7124 -6.3705 -0.9434 18 1 -0.4851 0.8400 0.0004 19 1 0.3556 -2.3881 -0.0016 20 1 2.6855 -3.7140 -0.8911 21 1 2.6842 -3.7148 0.8888 22 1 0.4370 -4.7622 0.8875 23 1 0.4377 -4.7618 -0.8924 24 1 0.8340 -6.8690 1.7450 25 1 3.6661 -9.3922 0.0382 26 1 4.1102 -7.7125 -1.7082 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390156979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:15 Heat of formation + Delta-G solvation = 53.436106 kcal Electronic energy + Delta-G solvation = -11146.167381 eV Core-core repulsion = 9032.217762 eV Total energy + Delta-G solvation = -2113.949619 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.00078 -35.56854 -34.09479 -32.80702 -30.89034 -28.23178 -24.87411 -24.29605 -22.63568 -20.99837 -17.48625 -17.22404 -16.84241 -15.69631 -14.99498 -14.47345 -13.76186 -13.71360 -13.22162 -13.00400 -12.15342 -11.51338 -11.45757 -11.04204 -10.97332 -10.79640 -10.68994 -10.10873 -9.71345 -9.12546 -8.97724 -8.82878 -6.90576 -5.74286 -3.03183 0.81169 1.18377 3.46594 3.50346 3.51789 3.73659 4.10752 4.30734 4.50374 4.63080 4.84719 5.18332 5.31054 5.46768 5.57672 5.80617 5.85541 6.10569 6.25714 6.45983 6.80061 6.91596 7.31754 7.72306 7.84478 8.44611 9.55599 10.12224 10.47614 11.48690 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.089776 B = 0.006582 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.810976 B = 4253.074471 C = 4413.149935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.163 3.837 11 C -0.079 4.079 12 C 0.103 3.897 13 C 0.048 3.952 14 N -0.440 5.440 15 C 0.028 3.972 16 C 0.053 3.947 17 N -0.433 5.433 18 H 0.256 0.744 19 H 0.384 0.616 20 H 0.032 0.968 21 H 0.015 0.985 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.169 0.831 25 H 0.165 0.835 26 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -14.954 -0.093 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.035 3.965 11 C -0.118 4.118 12 C -0.038 4.038 13 C -0.113 4.113 14 N -0.154 5.154 15 C -0.131 4.131 16 C -0.107 4.107 17 N -0.148 5.148 18 H 0.065 0.935 19 H 0.217 0.783 20 H 0.050 0.950 21 H 0.033 0.967 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.187 0.813 25 H 0.182 0.818 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.194 -14.836 -0.092 15.418 hybrid contribution 0.244 0.843 -0.022 0.878 sum 4.438 -13.993 -0.114 14.680 Atomic orbital electron populations 1.69646 1.05102 1.25783 1.57832 1.24738 0.95552 0.97691 1.03029 0.86243 0.78506 0.83436 0.77871 1.21238 1.21656 1.21268 1.19185 0.91048 0.84092 1.42673 0.91224 1.42337 1.05866 0.99959 1.89692 1.20530 0.92959 0.84519 0.98476 1.20780 0.97960 0.89222 1.03796 1.22439 0.93315 0.97300 0.90729 1.23677 0.98955 0.89876 0.98743 1.68412 1.04845 1.19582 1.22565 1.23675 0.96377 1.00821 0.92226 1.23799 0.98176 0.90078 0.98607 1.68359 1.04546 1.19004 1.22889 0.93455 0.78262 0.94995 0.96687 0.89686 0.89323 0.81347 0.81750 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.85 15 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 15 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 15 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 15 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 15 9 N -0.73 -19.12 5.60 -59.91 -0.34 -19.46 15 10 C 0.16 3.44 6.13 -4.04 -0.02 3.42 15 11 C -0.08 -1.30 5.74 -27.89 -0.16 -1.46 15 12 C 0.10 1.55 6.17 -82.41 -0.51 1.04 15 13 C 0.05 0.63 10.85 -17.37 -0.19 0.45 15 14 N -0.44 -5.81 10.50 -13.05 -0.14 -5.94 15 15 C 0.03 0.31 11.22 -17.37 -0.20 0.12 15 16 C 0.05 0.63 11.22 -17.38 -0.20 0.43 15 17 N -0.43 -6.63 10.06 -9.29 -0.09 -6.73 15 18 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 19 H 0.38 10.27 7.67 -40.82 -0.31 9.96 15 20 H 0.03 0.71 7.97 -51.93 -0.41 0.30 15 21 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.08 1.27 7.89 -51.93 -0.41 0.86 15 23 H 0.09 1.47 8.14 -51.93 -0.42 1.05 15 24 H 0.17 1.82 7.96 -52.49 -0.42 1.41 15 25 H 0.17 1.18 8.06 -52.48 -0.42 0.76 15 26 H 0.17 1.35 8.06 -52.49 -0.42 0.93 15 LS Contribution 236.94 15.07 3.57 3.57 Total: -1.00 -32.88 236.94 -5.60 -38.48 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.79 Total: 3.76 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.52 Total: -3.55 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.16 Total: -59.98 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.88 -5.60 -38.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390156979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.915 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds