Wall clock time and date at job start Mon Mar 30 2020 02:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48497 * 109.46725 * 240.00034 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 C 1.38392 * 119.99891 * 124.99899 * 12 11 10 14 14 N 1.32128 * 119.99535 * 179.97438 * 13 12 11 15 15 C 1.32159 * 119.99880 * 359.97438 * 14 13 12 16 16 C 1.38339 * 120.00308 * 0.02562 * 15 14 13 17 17 N 1.32125 * 120.00277 * 304.72580 * 12 11 10 18 18 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 21 21 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 22 22 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 23 23 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 24 24 H 1.07998 * 120.00584 * 359.96041 * 13 12 11 25 25 H 1.08005 * 119.99868 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.00038 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 6 1.8175 -6.1247 -0.0029 13 6 1.5681 -7.0682 0.9784 14 7 2.2284 -8.2126 0.9775 15 6 3.1267 -8.4565 0.0392 16 6 3.3759 -7.5134 -0.9417 17 7 2.7124 -6.3705 -0.9434 18 1 -0.4851 0.8400 0.0004 19 1 0.3556 -2.3881 -0.0016 20 1 2.6855 -3.7140 -0.8911 21 1 2.6842 -3.7148 0.8888 22 1 0.4370 -4.7622 0.8875 23 1 0.4377 -4.7618 -0.8924 24 1 0.8340 -6.8690 1.7450 25 1 3.6661 -9.3922 0.0382 26 1 4.1102 -7.7125 -1.7082 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390156979.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:15 Heat of formation + Delta-G solvation = 29.347093 kcal Electronic energy + Delta-G solvation = -11147.211959 eV Core-core repulsion = 9032.217762 eV Total energy + Delta-G solvation = -2114.994197 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.99428 -37.23160 -35.38306 -34.27817 -32.61608 -29.75249 -26.40552 -25.49733 -24.21398 -22.51746 -19.27307 -18.50685 -17.80051 -16.94346 -16.49333 -16.01506 -15.29508 -15.22271 -15.07146 -14.31522 -13.43177 -12.99006 -12.87116 -12.74779 -12.52909 -12.43861 -12.15481 -12.05098 -11.81793 -10.95985 -10.13371 -9.97311 -9.03949 -7.96843 -5.26949 -0.14806 0.19026 1.46978 1.50602 1.56884 2.54559 2.76235 3.13456 3.36390 3.39821 3.54337 3.78814 4.15685 4.24025 4.34518 4.52807 4.54162 4.64496 4.74124 5.17719 5.23472 5.45759 5.48967 6.25192 6.35784 6.86982 7.31669 8.04481 8.30595 9.26354 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.089776 B = 0.006582 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.810976 B = 4253.074471 C = 4413.149935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.253 4.253 8 H 0.072 0.928 9 N -0.746 5.746 10 C 0.168 3.832 11 C -0.065 4.065 12 C 0.079 3.921 13 C 0.047 3.953 14 N -0.457 5.457 15 C 0.043 3.957 16 C 0.051 3.949 17 N -0.467 5.467 18 H 0.254 0.746 19 H 0.377 0.623 20 H 0.019 0.981 21 H 0.011 0.989 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.188 0.812 25 H 0.207 0.793 26 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -16.118 0.008 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.389 5.389 10 C 0.041 3.959 11 C -0.103 4.103 12 C -0.060 4.060 13 C -0.111 4.111 14 N -0.172 5.172 15 C -0.117 4.117 16 C -0.109 4.109 17 N -0.183 5.183 18 H 0.062 0.938 19 H 0.209 0.791 20 H 0.037 0.963 21 H 0.029 0.971 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.204 0.796 25 H 0.224 0.776 26 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.361 -16.019 0.021 16.892 hybrid contribution -0.025 1.056 -0.089 1.060 sum 5.335 -14.963 -0.068 15.886 Atomic orbital electron populations 1.69800 1.06552 1.26378 1.59051 1.25595 0.96498 1.01143 1.03257 0.85176 0.77250 0.78894 0.78221 1.20422 1.21723 1.20288 1.19572 0.91439 0.85421 1.42032 0.91038 1.42533 1.05756 1.01054 1.89587 1.20540 0.93638 0.84382 0.97366 1.20537 0.97011 0.88538 1.04238 1.22150 0.94533 0.97151 0.92170 1.23869 0.99192 0.89583 0.98483 1.68514 1.05714 1.19380 1.23572 1.24383 0.94910 1.01809 0.90592 1.24410 0.98012 0.88946 0.99554 1.68272 1.05381 1.21097 1.23583 0.93773 0.79077 0.96273 0.97066 0.88279 0.89980 0.79558 0.77604 0.78200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.77 13.06 21.65 0.28 -59.49 15 2 C -0.07 -4.25 5.50 84.86 0.47 -3.78 15 3 Si 0.98 46.77 29.55 68.60 2.03 48.79 15 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 7 C -0.25 -14.68 9.99 84.03 0.84 -13.84 15 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 15 9 N -0.75 -39.49 5.60 -343.45 -1.92 -41.41 15 10 C 0.17 7.18 6.13 86.38 0.53 7.70 15 11 C -0.06 -2.14 5.74 29.85 0.17 -1.96 15 12 C 0.08 2.34 6.17 42.55 0.26 2.61 15 13 C 0.05 1.19 10.85 84.68 0.92 2.11 15 14 N -0.46 -10.98 10.50 -195.22 -2.05 -13.03 15 15 C 0.04 0.80 11.22 84.67 0.95 1.75 15 16 C 0.05 1.07 11.22 84.67 0.95 2.02 15 17 N -0.47 -13.85 10.06 -183.30 -1.84 -15.70 15 18 H 0.25 15.11 8.31 -92.71 -0.77 14.33 15 19 H 0.38 20.63 7.67 -92.71 -0.71 19.92 15 20 H 0.02 0.87 7.97 -2.39 -0.02 0.85 15 21 H 0.01 0.50 8.14 -2.39 -0.02 0.48 15 22 H 0.10 2.93 7.89 -2.39 -0.02 2.91 15 23 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.19 3.76 7.96 -2.91 -0.02 3.74 15 25 H 0.21 1.97 8.06 -2.91 -0.02 1.95 15 26 H 0.20 2.56 8.06 -2.91 -0.02 2.54 15 Total: -1.00 -70.20 236.94 2.05 -68.15 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.47 Total: 16.09 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.09 Total: -3.39 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -5.54 Total: -129.64 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -70.20 2.05 -68.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390156979.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.498 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds