Wall clock time and date at job start Mon Mar 30 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48496 * 109.47085 * 270.00388 * 3 2 1 5 5 H 1.48499 * 109.47016 * 30.00211 * 3 2 1 6 6 H 1.48497 * 109.47199 * 150.00396 * 3 2 1 7 7 C 1.38910 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37323 * 120.00173 * 359.97438 * 7 2 1 10 10 N 1.40093 * 126.15921 * 0.04135 * 9 7 2 11 11 C 1.31058 * 108.43928 * 179.97438 * 10 9 7 12 12 C 1.50703 * 125.70003 * 179.97438 * 11 10 9 13 13 C 1.53005 * 117.49655 * 163.76703 * 12 11 10 14 14 C 1.53004 * 117.49649 * 95.11159 * 12 11 10 15 15 C 1.39797 * 108.59371 * 359.73751 * 11 10 9 16 16 C 1.36190 * 107.91742 * 0.42908 * 15 11 10 17 17 N 1.38878 * 126.31942 * 179.84478 * 16 15 11 18 18 H 0.97000 * 119.99438 * 359.97438 * 1 2 3 19 19 H 1.08994 * 115.55081 * 309.43902 * 12 11 10 20 20 H 1.08999 * 117.49609 * 359.97438 * 13 12 11 21 21 H 1.09004 * 117.49474 * 145.02046 * 13 12 11 22 22 H 1.09007 * 117.49265 * 214.97814 * 14 12 11 23 23 H 1.08995 * 117.50082 * 359.97002 * 14 12 11 24 24 H 1.07999 * 126.04061 * 180.30738 * 15 11 10 25 25 H 0.97001 * 120.00386 * 179.69323 * 17 16 15 26 26 H 0.97005 * 119.99889 * 359.41126 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4951 2.0464 -1.4000 5 1 1.4452 2.6526 0.7001 6 1 3.5452 1.4401 0.6999 7 6 2.0081 -1.2030 -0.0005 8 1 3.0881 -1.2031 -0.0010 9 7 1.3214 -2.3923 -0.0005 10 7 -0.0714 -2.5425 -0.0008 11 6 -0.3502 -3.8231 -0.0013 12 6 -1.7331 -4.4221 -0.0012 13 6 -1.8635 -5.8984 -0.3812 14 6 -2.3336 -4.8132 -1.3530 15 6 0.8496 -4.5405 -0.0074 16 6 1.8743 -3.6434 -0.0009 17 7 3.2303 -3.9433 -0.0008 18 1 -0.4849 0.8401 0.0004 19 1 -2.4126 -4.0360 0.7586 20 1 -0.9491 -6.4363 -0.6316 21 1 -2.6291 -6.4835 0.1285 22 1 -3.4083 -4.6848 -1.4823 23 1 -1.7287 -4.6369 -2.2424 24 1 0.9469 -5.6161 -0.0138 25 1 3.8853 -3.2279 -0.0003 26 1 3.5224 -4.8684 0.0030 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409438995.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:20 Heat of formation + Delta-G solvation = 104.465182 kcal Electronic energy + Delta-G solvation = -11725.376193 eV Core-core repulsion = 9613.639362 eV Total energy + Delta-G solvation = -2111.736832 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.45877 -36.30858 -33.27555 -32.99234 -29.90548 -26.73776 -25.07149 -22.34141 -21.77253 -19.46926 -18.51256 -17.40900 -15.80296 -15.12195 -14.77843 -14.33863 -13.49189 -13.22455 -13.10648 -12.24278 -11.34723 -11.19006 -11.06056 -10.91058 -10.65971 -10.36241 -10.16786 -9.75872 -9.63600 -8.99430 -8.46557 -7.65457 -6.36029 -6.26449 -4.05593 3.06005 3.12523 3.16645 3.84994 3.91673 4.15415 4.46849 4.73233 5.13754 5.19336 5.57067 5.64461 5.78971 6.14685 6.32736 6.43374 6.67466 6.72074 6.94231 7.17741 7.28899 7.31085 7.84904 8.25011 8.43219 8.73822 8.89144 9.65569 9.89571 10.61758 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045973 B = 0.011905 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.910948 B = 2351.315662 C = 2884.477656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.048 3.952 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.334 4.334 8 H 0.107 0.893 9 N -0.187 5.187 10 N -0.246 5.246 11 C 0.022 3.978 12 C -0.043 4.043 13 C -0.177 4.177 14 C -0.175 4.175 15 C -0.351 4.351 16 C 0.255 3.745 17 N -0.869 5.869 18 H 0.269 0.731 19 H 0.102 0.898 20 H 0.093 0.907 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.389 0.611 26 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -5.202 -0.570 5.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.166 4.166 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.465 4.465 8 H 0.124 0.876 9 N 0.040 4.960 10 N -0.074 5.074 11 C -0.137 4.137 12 C -0.063 4.063 13 C -0.214 4.214 14 C -0.213 4.213 15 C -0.387 4.387 16 C 0.029 3.971 17 N -0.420 5.420 18 H 0.080 0.920 19 H 0.120 0.880 20 H 0.112 0.888 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.109 0.891 24 H 0.130 0.870 25 H 0.216 0.784 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.505 -3.753 -0.562 3.829 hybrid contribution 1.243 -0.099 0.004 1.247 sum 1.748 -3.853 -0.558 4.267 Atomic orbital electron populations 1.70242 1.05805 1.27161 1.38027 1.25463 0.95630 0.99669 0.95863 0.85947 0.79331 0.80777 0.78698 1.19886 1.20282 1.19165 1.19507 0.91093 0.80996 1.54893 0.87582 1.44673 1.03165 1.02134 1.46066 1.78212 0.88828 1.13904 1.26460 1.20752 0.92462 0.92437 1.08061 1.19813 0.93446 0.95181 0.97907 1.22883 1.02628 0.91778 1.04125 1.22886 0.99927 1.03864 0.94666 1.19689 0.90510 0.96852 1.31613 1.17930 0.84882 0.86684 1.07598 1.40943 1.02107 1.08855 1.90125 0.92025 0.88014 0.88847 0.89460 0.89482 0.89146 0.87009 0.78422 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.68 11.82 55.49 0.66 -22.03 15 2 C 0.05 1.31 5.50 -17.50 -0.10 1.21 15 3 Si 0.93 19.83 29.55 -169.99 -5.02 14.81 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 7 C -0.33 -9.23 10.11 -14.84 -0.15 -9.38 15 8 H 0.11 2.64 7.11 -52.49 -0.37 2.27 15 9 N -0.19 -5.30 3.75 -10.79 -0.04 -5.34 15 10 N -0.25 -7.21 10.41 33.69 0.35 -6.86 15 11 C 0.02 0.56 6.84 -82.34 -0.56 0.00 15 12 C -0.04 -0.90 6.33 -91.77 -0.58 -1.48 15 13 C -0.18 -2.91 10.02 -26.69 -0.27 -3.18 15 14 C -0.18 -3.11 10.24 -26.69 -0.27 -3.38 15 15 C -0.35 -8.48 10.13 -39.74 -0.40 -8.89 15 16 C 0.26 6.36 7.96 -152.33 -1.21 5.14 15 17 N -0.87 -16.83 9.08 31.33 0.28 -16.54 15 18 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 19 H 0.10 2.04 8.14 -51.93 -0.42 1.61 15 20 H 0.09 1.54 7.12 -51.93 -0.37 1.17 15 21 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.09 1.70 8.14 -51.93 -0.42 1.28 15 24 H 0.11 2.38 7.36 -52.49 -0.39 2.00 15 25 H 0.39 7.03 8.05 -40.82 -0.33 6.70 15 26 H 0.40 6.27 8.95 -40.82 -0.37 5.90 15 LS Contribution 232.52 15.07 3.50 3.50 Total: -1.00 -32.40 232.52 -6.46 -38.86 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -2.65 Total: 13.55 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -3.55 Total: -19.96 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 1.25 Total: -50.77 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.40 -6.46 -38.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438995.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.325 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds