Wall clock time and date at job start Mon Mar 30 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48496 * 109.47085 * 270.00388 * 3 2 1 5 5 H 1.48499 * 109.47016 * 30.00211 * 3 2 1 6 6 H 1.48497 * 109.47199 * 150.00396 * 3 2 1 7 7 C 1.38910 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37323 * 120.00173 * 359.97438 * 7 2 1 10 10 N 1.40093 * 126.15921 * 0.04135 * 9 7 2 11 11 C 1.31058 * 108.43928 * 179.97438 * 10 9 7 12 12 C 1.50703 * 125.70003 * 179.97438 * 11 10 9 13 13 C 1.53005 * 117.49655 * 163.76703 * 12 11 10 14 14 C 1.53004 * 117.49649 * 95.11159 * 12 11 10 15 15 C 1.39797 * 108.59371 * 359.73751 * 11 10 9 16 16 C 1.36190 * 107.91742 * 0.42908 * 15 11 10 17 17 N 1.38878 * 126.31942 * 179.84478 * 16 15 11 18 18 H 0.97000 * 119.99438 * 359.97438 * 1 2 3 19 19 H 1.08994 * 115.55081 * 309.43902 * 12 11 10 20 20 H 1.08999 * 117.49609 * 359.97438 * 13 12 11 21 21 H 1.09004 * 117.49474 * 145.02046 * 13 12 11 22 22 H 1.09007 * 117.49265 * 214.97814 * 14 12 11 23 23 H 1.08995 * 117.50082 * 359.97002 * 14 12 11 24 24 H 1.07999 * 126.04061 * 180.30738 * 15 11 10 25 25 H 0.97001 * 120.00386 * 179.69323 * 17 16 15 26 26 H 0.97005 * 119.99889 * 359.41126 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4951 2.0464 -1.4000 5 1 1.4452 2.6526 0.7001 6 1 3.5452 1.4401 0.6999 7 6 2.0081 -1.2030 -0.0005 8 1 3.0881 -1.2031 -0.0010 9 7 1.3214 -2.3923 -0.0005 10 7 -0.0714 -2.5425 -0.0008 11 6 -0.3502 -3.8231 -0.0013 12 6 -1.7331 -4.4221 -0.0012 13 6 -1.8635 -5.8984 -0.3812 14 6 -2.3336 -4.8132 -1.3530 15 6 0.8496 -4.5405 -0.0074 16 6 1.8743 -3.6434 -0.0009 17 7 3.2303 -3.9433 -0.0008 18 1 -0.4849 0.8401 0.0004 19 1 -2.4126 -4.0360 0.7586 20 1 -0.9491 -6.4363 -0.6316 21 1 -2.6291 -6.4835 0.1285 22 1 -3.4083 -4.6848 -1.4823 23 1 -1.7287 -4.6369 -2.2424 24 1 0.9469 -5.6161 -0.0138 25 1 3.8853 -3.2279 -0.0003 26 1 3.5224 -4.8684 0.0030 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409438995.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:20 Heat of formation + Delta-G solvation = 82.634661 kcal Electronic energy + Delta-G solvation = -11726.322836 eV Core-core repulsion = 9613.639362 eV Total energy + Delta-G solvation = -2112.683474 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.37309 -37.83243 -35.20585 -34.76581 -31.87456 -28.62700 -27.02399 -24.09212 -23.14109 -21.32985 -20.31111 -19.33005 -17.60266 -16.78936 -16.47822 -15.99836 -15.35947 -14.92885 -14.89382 -14.04057 -13.20622 -12.89831 -12.85065 -12.43676 -12.22194 -12.05869 -11.78956 -11.43543 -11.24238 -10.80755 -10.36549 -9.61541 -8.33815 -8.14161 -6.11803 1.36995 1.37945 1.54170 1.94218 2.13791 2.36804 2.67006 3.17583 3.21480 3.47183 4.07175 4.16252 4.33210 4.71383 4.82513 4.86280 5.07420 5.20734 5.32760 5.39546 5.41436 5.49361 5.98106 6.36417 6.60074 6.93380 7.20670 7.72947 7.94994 8.66919 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.045973 B = 0.011905 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.910948 B = 2351.315662 C = 2884.477656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C -0.007 4.007 3 Si 1.011 2.989 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.249 1.249 7 C -0.366 4.366 8 H 0.124 0.876 9 N -0.220 5.220 10 N -0.306 5.306 11 C 0.020 3.980 12 C -0.087 4.087 13 C -0.139 4.139 14 C -0.168 4.168 15 C -0.363 4.363 16 C 0.254 3.746 17 N -0.850 5.850 18 H 0.269 0.731 19 H 0.100 0.900 20 H 0.095 0.905 21 H 0.123 0.877 22 H 0.114 0.886 23 H 0.073 0.927 24 H 0.141 0.859 25 H 0.397 0.603 26 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 -6.242 -0.664 6.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.216 4.216 3 Si 0.831 3.169 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.173 1.173 7 C -0.495 4.495 8 H 0.142 0.858 9 N 0.005 4.995 10 N -0.134 5.134 11 C -0.141 4.141 12 C -0.107 4.107 13 C -0.177 4.177 14 C -0.206 4.206 15 C -0.398 4.398 16 C 0.026 3.974 17 N -0.403 5.403 18 H 0.079 0.921 19 H 0.118 0.882 20 H 0.114 0.886 21 H 0.142 0.858 22 H 0.132 0.868 23 H 0.092 0.908 24 H 0.159 0.841 25 H 0.225 0.775 26 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.288 -4.827 -0.657 5.039 hybrid contribution 1.013 0.055 0.026 1.015 sum 2.301 -4.772 -0.631 5.335 Atomic orbital electron populations 1.70437 1.07952 1.28084 1.40093 1.26639 0.96508 1.03651 0.94791 0.84710 0.78210 0.75014 0.78928 1.19226 1.20254 1.17287 1.20133 0.92180 0.81626 1.55583 0.85807 1.44895 1.03234 1.03267 1.48133 1.78102 0.90162 1.16326 1.28810 1.21583 0.95075 0.91751 1.05645 1.19969 0.91658 0.98836 1.00236 1.23006 1.03366 0.89583 1.01705 1.22939 1.01077 1.03931 0.92694 1.20089 0.89943 0.98180 1.31574 1.18467 0.87071 0.86045 1.05835 1.40882 1.00139 1.10368 1.88934 0.92127 0.88181 0.88623 0.85837 0.86809 0.90830 0.84132 0.77530 0.75306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.17 11.82 21.65 0.26 -49.91 15 2 C -0.01 -0.37 5.50 84.92 0.47 0.10 15 3 Si 1.01 41.07 29.55 68.60 2.03 43.09 15 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 5 H -0.28 -11.10 7.11 99.48 0.71 -10.39 15 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 15 7 C -0.37 -20.49 10.11 83.99 0.85 -19.64 15 8 H 0.12 6.13 7.11 -2.91 -0.02 6.11 15 9 N -0.22 -12.76 3.75 -188.05 -0.70 -13.46 15 10 N -0.31 -18.52 10.41 -47.32 -0.49 -19.02 15 11 C 0.02 1.01 6.84 43.05 0.29 1.30 15 12 C -0.09 -3.54 6.33 -11.54 -0.07 -3.61 15 13 C -0.14 -4.16 10.02 30.62 0.31 -3.86 15 14 C -0.17 -5.68 10.24 30.62 0.31 -5.37 15 15 C -0.36 -17.23 10.13 22.17 0.22 -17.01 15 16 C 0.25 12.52 7.96 131.06 1.04 13.57 15 17 N -0.85 -31.47 9.08 -54.80 -0.50 -31.97 15 18 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 19 H 0.10 4.02 8.14 -2.39 -0.02 4.00 15 20 H 0.10 2.83 7.12 -2.39 -0.02 2.82 15 21 H 0.12 2.83 8.14 -2.38 -0.02 2.81 15 22 H 0.11 3.19 8.14 -2.38 -0.02 3.17 15 23 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 24 H 0.14 5.66 7.36 -2.91 -0.02 5.64 15 25 H 0.40 13.68 8.05 -92.71 -0.75 12.94 15 26 H 0.42 12.09 8.95 -92.70 -0.83 11.26 15 Total: -1.00 -72.55 232.52 3.65 -68.90 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.36 Total: 36.89 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 3.43 Total: -34.52 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -1.44 Total: -114.36 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -72.55 3.65 -68.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438995.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.535 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds