Wall clock time and date at job start Mon Mar 30 2020 01:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86793 * 120.00314 * 2 1 4 4 H 1.48504 * 109.47484 * 267.05484 * 3 2 1 5 5 H 1.48503 * 109.47246 * 27.05397 * 3 2 1 6 6 H 1.48500 * 109.47380 * 147.05511 * 3 2 1 7 7 C 1.39936 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00570 * 342.41265 * 7 2 1 9 9 C 1.41157 * 119.99923 * 162.13443 * 7 2 1 10 10 C 1.40723 * 120.29032 * 330.14180 * 9 7 2 11 11 C 1.36489 * 119.92949 * 179.76013 * 10 9 7 12 12 C 1.50699 * 119.73173 * 180.25552 * 11 10 9 13 13 N 1.46905 * 109.47056 * 270.26049 * 12 11 10 14 14 C 1.38825 * 120.53910 * 0.51824 * 11 10 9 15 15 C 1.38300 * 120.58963 * 359.73758 * 14 11 10 16 16 C 1.38451 * 120.05337 * 359.97438 * 15 14 11 17 17 O 1.35645 * 120.26771 * 179.97438 * 16 15 14 18 18 H 0.97001 * 119.99913 * 359.97438 * 1 2 3 19 19 H 1.07995 * 120.03587 * 0.02562 * 10 9 7 20 20 H 1.08997 * 109.47373 * 30.26439 * 12 11 10 21 21 H 1.09007 * 109.47136 * 150.26126 * 12 11 10 22 22 H 1.00901 * 110.99516 * 179.97438 * 13 12 11 23 23 H 1.00897 * 111.00069 * 303.95227 * 13 12 11 24 24 H 1.07995 * 119.70647 * 179.71377 * 14 11 10 25 25 H 1.08002 * 119.97891 * 179.97438 * 15 14 11 26 26 H 0.96697 * 113.99838 * 271.90726 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.5526 2.0104 -1.3982 5 1 1.4104 2.6698 0.6368 6 1 3.5077 1.4588 0.7614 7 6 2.0083 -1.2119 -0.0005 8 1 1.5062 -2.1255 0.2816 9 6 3.3688 -1.2413 -0.3756 10 6 3.8702 -0.3073 -1.3012 11 6 5.1881 -0.3393 -1.6549 12 6 5.7216 0.6665 -2.6421 13 7 5.5888 0.1334 -4.0046 14 6 6.0399 -1.2943 -1.1168 15 6 5.5693 -2.2259 -0.2094 16 6 4.2381 -2.2121 0.1711 17 8 3.7718 -3.1241 1.0604 18 1 -0.4850 0.8401 0.0004 19 1 3.2139 0.4366 -1.7279 20 1 5.1551 1.5939 -2.5580 21 1 6.7726 0.8623 -2.4294 22 1 5.9395 0.7902 -4.6855 23 1 6.0518 -0.7589 -4.0904 24 1 7.0793 -1.3102 -1.4096 25 1 6.2405 -2.9648 0.2028 26 1 3.4678 -3.9481 0.6559 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575601637.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:31 Heat of formation + Delta-G solvation = -55.289248 kcal Electronic energy + Delta-G solvation = -11796.787227 eV Core-core repulsion = 9645.830172 eV Total energy + Delta-G solvation = -2150.957055 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30919 -37.69942 -35.85908 -34.75460 -32.31283 -30.48147 -27.03830 -25.33764 -23.40624 -21.52962 -19.24249 -19.00836 -17.33605 -16.61867 -16.49345 -16.08228 -15.46121 -15.18675 -14.59877 -14.39686 -13.82583 -13.52949 -13.27545 -12.79982 -12.51182 -12.25935 -11.95074 -11.62287 -11.36934 -10.68411 -9.58181 -9.55520 -9.19375 -8.92600 -6.48168 0.63133 0.77885 1.22794 1.35501 1.44572 2.09118 2.54142 3.28798 3.83122 3.95720 4.09675 4.22827 4.42565 4.70511 4.75470 4.82420 5.09325 5.27870 5.48188 5.68360 5.78350 5.97973 6.18548 6.23677 6.36457 6.59849 6.71273 6.75831 7.27788 8.16066 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.018362 C = 0.012549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.029407 B = 1524.483502 C = 2230.707338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.044 3.956 3 Si 0.966 3.034 4 H -0.251 1.251 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.472 4.472 8 H 0.056 0.944 9 C 0.046 3.954 10 C -0.220 4.220 11 C -0.059 4.059 12 C 0.107 3.893 13 N -0.852 5.852 14 C -0.206 4.206 15 C -0.107 4.107 16 C -0.023 4.023 17 O -0.504 6.504 18 H 0.294 0.706 19 H 0.100 0.900 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.353 0.647 23 H 0.348 0.652 24 H 0.135 0.865 25 H 0.131 0.869 26 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.730 1.875 -4.752 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.170 4.170 3 Si 0.790 3.210 4 H -0.176 1.176 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.240 4.240 11 C -0.060 4.060 12 C -0.023 4.023 13 N -0.385 5.385 14 C -0.226 4.226 15 C -0.125 4.125 16 C -0.069 4.069 17 O -0.313 6.313 18 H 0.104 0.896 19 H 0.117 0.883 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.167 0.833 23 H 0.162 0.838 24 H 0.153 0.847 25 H 0.149 0.851 26 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.800 2.413 -4.181 10.924 hybrid contribution 0.402 -0.027 -0.102 0.416 sum 10.202 2.386 -4.282 11.319 Atomic orbital electron populations 1.69728 1.09050 1.31452 1.37227 1.26833 0.95414 1.04212 0.90524 0.85558 0.78908 0.76592 0.79941 1.17594 1.20088 1.18567 1.19279 0.94287 0.95616 1.40969 0.92536 1.18266 0.92928 0.93626 0.90904 1.20764 0.96420 1.03961 1.02863 1.19494 0.93005 0.96729 0.96772 1.20640 0.98868 0.95222 0.87562 1.58549 1.67206 1.08721 1.04008 1.20610 0.99684 0.98989 1.03289 1.21265 0.94151 0.99811 0.97274 1.18906 0.92090 0.97351 0.98525 1.84697 1.84066 1.28477 1.34052 0.89573 0.88261 0.91735 0.92599 0.83257 0.83847 0.84702 0.85095 0.76813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.12 13.93 21.83 0.30 -47.82 15 2 C 0.04 2.48 5.41 85.25 0.46 2.94 15 3 Si 0.97 44.66 24.66 68.60 1.69 46.36 15 4 H -0.25 -10.89 6.29 99.48 0.63 -10.27 15 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 6 H -0.26 -12.44 7.11 99.48 0.71 -11.73 15 7 C -0.47 -27.69 9.19 23.40 0.22 -27.48 15 8 H 0.06 3.56 7.90 -2.91 -0.02 3.54 15 9 C 0.05 2.43 5.12 -21.20 -0.11 2.32 15 10 C -0.22 -10.65 6.89 22.47 0.15 -10.49 15 11 C -0.06 -2.38 5.35 -20.13 -0.11 -2.49 15 12 C 0.11 3.34 6.89 85.56 0.59 3.93 15 13 N -0.85 -23.33 9.61 -189.99 -1.83 -25.16 15 14 C -0.21 -7.60 9.69 22.43 0.22 -7.38 15 15 C -0.11 -4.27 9.98 22.34 0.22 -4.05 15 16 C -0.02 -1.12 6.74 23.08 0.16 -0.97 15 17 O -0.50 -23.07 12.86 -89.59 -1.15 -24.22 15 18 H 0.29 14.95 8.30 -92.71 -0.77 14.18 15 19 H 0.10 4.93 4.46 -2.91 -0.01 4.92 15 20 H 0.06 2.08 8.08 -2.39 -0.02 2.06 15 21 H 0.06 1.42 8.08 -2.38 -0.02 1.40 15 22 H 0.35 7.29 9.08 -89.69 -0.81 6.47 15 23 H 0.35 8.67 8.99 -89.70 -0.81 7.87 15 24 H 0.14 3.90 8.06 -2.91 -0.02 3.88 15 25 H 0.13 4.41 8.06 -2.91 -0.02 4.39 15 26 H 0.38 13.79 9.06 -74.06 -0.67 13.12 15 Total: -1.00 -65.40 226.89 -0.32 -65.72 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -1.14 Total: 28.78 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 1.80 Total: -43.67 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.52 Total: -72.98 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.15 Total: -24.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.69 Total: 46.36 kcal Total: -65.40 -0.32 -65.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575601637.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.434 kcal (2) G-P(sol) polarization free energy of solvation -65.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds