Wall clock time and date at job start Mon Mar 30 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38793 * 119.70319 * 2 1 4 4 C 1.38820 * 120.51916 * 179.97438 * 3 2 1 5 5 N 1.40007 * 120.03658 * 180.02562 * 4 3 2 6 6 C 1.39093 * 119.92184 * 0.02562 * 4 3 2 7 7 O 1.35753 * 120.29275 * 179.97438 * 6 4 3 8 8 C 1.41121 * 119.41442 * 0.27369 * 6 4 3 9 9 C 1.41180 * 120.25404 * 179.72410 * 8 6 4 10 10 H 1.08000 * 120.00221 * 24.58320 * 9 8 6 11 11 C 1.39921 * 119.99928 * 204.57546 * 9 8 6 12 12 N 1.30871 * 120.00031 * 17.59959 * 11 9 8 13 13 Si 1.86801 * 120.00082 * 197.59589 * 11 9 8 14 14 H 1.48502 * 109.47018 * 90.00369 * 13 11 9 15 15 H 1.48496 * 109.47165 * 210.00314 * 13 11 9 16 16 H 1.48499 * 109.47061 * 330.00154 * 13 11 9 17 17 C 1.36458 * 119.70023 * 179.97438 * 2 1 3 18 18 H 1.09001 * 109.47346 * 90.00305 * 1 2 3 19 19 H 1.09002 * 109.47383 * 210.00011 * 1 2 3 20 20 H 1.09000 * 109.47025 * 330.00447 * 1 2 3 21 21 H 1.07996 * 119.74026 * 359.95143 * 3 2 1 22 22 H 0.96998 * 119.99769 * 179.97438 * 5 4 3 23 23 H 0.96996 * 120.00253 * 359.97438 * 5 4 3 24 24 H 0.96705 * 113.99399 * 89.99830 * 7 6 4 25 25 H 0.96998 * 120.00404 * 179.97438 * 12 11 9 26 26 H 1.08004 * 119.97007 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1947 1.2056 0.0000 4 6 3.5827 1.2253 0.0005 5 7 4.2662 2.4472 0.0011 6 6 4.2936 0.0298 0.0005 7 8 5.6511 0.0403 0.0005 8 6 3.5913 -1.1942 -0.0059 9 6 4.2950 -2.4181 -0.0119 10 1 5.3014 -2.4643 0.3773 11 6 3.6886 -3.5713 -0.5219 12 7 2.6365 -3.4707 -1.2937 13 14 4.3807 -5.2546 -0.1012 14 1 3.7330 -5.7612 1.1354 15 1 4.1136 -6.1934 -1.2202 16 1 5.8459 -5.1472 0.1157 17 6 2.1830 -1.1853 0.0005 18 1 -0.3634 -0.0001 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6456 2.1355 -0.0008 22 1 5.2361 2.4604 0.0018 23 1 3.7699 3.2806 0.0007 24 1 6.0444 0.0434 0.8840 25 1 2.2163 -4.2701 -1.6475 26 1 1.6376 -2.1175 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718536.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:24 Heat of formation + Delta-G solvation = -59.924774 kcal Electronic energy + Delta-G solvation = -11802.403952 eV Core-core repulsion = 9651.245885 eV Total energy + Delta-G solvation = -2151.158066 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.14591 -37.18732 -36.09352 -34.65723 -32.08401 -29.50326 -27.31009 -26.47472 -22.74364 -21.56673 -19.05424 -18.67598 -17.67989 -16.61628 -16.32387 -15.91349 -15.19328 -14.69120 -14.27072 -14.05037 -13.42384 -13.15088 -13.03680 -12.71033 -12.69392 -12.19807 -12.11854 -11.50380 -11.20335 -10.82137 -10.57620 -9.10013 -8.62403 -7.97236 -6.30681 0.94882 1.26864 1.38537 1.52137 1.57852 2.22179 2.75996 3.31582 3.66282 4.03602 4.46861 4.64930 4.93018 4.98102 5.10327 5.17844 5.33679 5.37757 5.60187 5.85168 6.03756 6.25528 6.29542 6.61413 6.81539 6.94031 7.00884 7.32013 7.51278 8.34833 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.038392 B = 0.014063 C = 0.010621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.148085 B = 1990.585303 C = 2635.580556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.051 4.051 3 C -0.304 4.304 4 C 0.213 3.787 5 N -0.872 5.872 6 C -0.125 4.125 7 O -0.493 6.493 8 C 0.092 3.908 9 C -0.484 4.484 10 H 0.072 0.928 11 C 0.033 3.967 12 N -0.819 5.819 13 Si 0.985 3.015 14 H -0.259 1.259 15 H -0.267 1.267 16 H -0.261 1.261 17 C -0.221 4.221 18 H 0.064 0.936 19 H 0.056 0.944 20 H 0.075 0.925 21 H 0.117 0.883 22 H 0.397 0.603 23 H 0.400 0.600 24 H 0.358 0.642 25 H 0.288 0.712 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 3.625 3.248 4.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.052 4.052 3 C -0.328 4.328 4 C 0.109 3.891 5 N -0.414 5.414 6 C -0.174 4.174 7 O -0.299 6.299 8 C 0.088 3.912 9 C -0.513 4.513 10 H 0.091 0.909 11 C -0.182 4.182 12 N -0.445 5.445 13 Si 0.805 3.195 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.185 1.185 17 C -0.241 4.241 18 H 0.083 0.917 19 H 0.075 0.925 20 H 0.094 0.906 21 H 0.135 0.865 22 H 0.225 0.775 23 H 0.229 0.771 24 H 0.209 0.791 25 H 0.099 0.901 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.893 3.445 2.466 4.329 hybrid contribution 0.596 -0.442 0.480 0.884 sum -0.297 3.003 2.946 4.217 Atomic orbital electron populations 1.20660 0.90749 1.02149 1.01740 1.19501 0.96310 0.92689 0.96716 1.19906 0.91166 0.97099 1.24579 1.17946 0.91791 0.85801 0.93585 1.42120 1.08752 1.03982 1.86578 1.18261 0.82059 0.91109 1.25996 1.84796 1.16998 1.96334 1.31783 1.18108 0.92927 0.92445 0.87684 1.19635 1.01253 0.93545 1.36866 0.90941 1.26812 0.94443 1.05059 0.91905 1.69932 1.19092 1.32951 1.22488 0.85171 0.79542 0.75677 0.79069 1.18358 1.19165 1.18491 1.20671 0.93625 0.96714 1.13125 0.91715 0.92464 0.90588 0.86478 0.77460 0.77113 0.79065 0.90147 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.54 9.99 71.23 0.71 -2.83 15 2 C -0.05 -2.41 5.84 -20.15 -0.12 -2.52 15 3 C -0.30 -13.48 9.53 22.54 0.21 -13.27 15 4 C 0.21 9.67 6.77 38.18 0.26 9.93 15 5 N -0.87 -30.17 9.09 -51.10 -0.46 -30.64 15 6 C -0.12 -6.45 6.76 23.18 0.16 -6.29 15 7 O -0.49 -23.21 12.04 -90.78 -1.09 -24.30 15 8 C 0.09 5.21 5.58 -21.21 -0.12 5.09 15 9 C -0.48 -27.31 8.72 23.40 0.20 -27.11 15 10 H 0.07 4.00 7.65 -2.91 -0.02 3.98 15 11 C 0.03 1.73 5.14 85.24 0.44 2.16 15 12 N -0.82 -44.20 10.97 21.82 0.24 -43.96 15 13 Si 0.98 39.41 29.59 68.60 2.03 41.44 15 14 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 15 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 16 H -0.26 -10.27 7.11 99.48 0.71 -9.57 15 17 C -0.22 -11.98 8.25 22.49 0.19 -11.80 15 18 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 19 H 0.06 2.04 8.07 -2.39 -0.02 2.02 15 20 H 0.08 2.34 8.08 -2.39 -0.02 2.32 15 21 H 0.12 4.43 8.06 -2.91 -0.02 4.40 15 22 H 0.40 12.72 8.20 -92.71 -0.76 11.96 15 23 H 0.40 11.26 8.84 -92.71 -0.82 10.44 15 24 H 0.36 13.68 9.06 -74.05 -0.67 13.01 15 25 H 0.29 13.95 8.30 -92.71 -0.77 13.18 15 26 H 0.10 5.69 6.17 -2.91 -0.02 5.67 15 Total: -1.00 -64.66 230.17 1.62 -63.04 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: -1.02 Total: 41.05 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 1.93 Total: -46.63 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -0.23 Total: -74.59 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.09 Total: -24.30 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -64.66 1.62 -63.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718536.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.113 kcal (2) G-P(sol) polarization free energy of solvation -64.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds