Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36403 * 119.97104 * 2 1 4 4 C 1.39374 * 120.33697 * 180.02562 * 3 2 1 5 5 N 1.38995 * 119.86767 * 179.97438 * 4 3 2 6 6 C 1.40118 * 120.26351 * 359.97438 * 4 3 2 7 7 O 1.35968 * 120.02372 * 179.97438 * 6 4 3 8 8 C 1.37656 * 119.94792 * 359.97438 * 6 4 3 9 9 C 1.40869 * 119.97878 * 179.71979 * 2 1 3 10 10 C 1.41113 * 120.13051 * 0.02562 * 9 2 1 11 11 H 1.08007 * 120.00380 * 25.54975 * 10 9 2 12 12 C 1.39844 * 119.99723 * 205.54841 * 10 9 2 13 13 N 1.30912 * 120.00062 * 15.28209 * 12 10 9 14 14 Si 1.86798 * 119.99898 * 195.27491 * 12 10 9 15 15 H 1.48499 * 109.47171 * 90.00591 * 14 12 10 16 16 H 1.48509 * 109.47263 * 210.00124 * 14 12 10 17 17 H 1.48500 * 109.47643 * 330.00198 * 14 12 10 18 18 H 1.09000 * 109.47296 * 90.00553 * 1 2 3 19 19 H 1.09005 * 109.46457 * 210.00111 * 1 2 3 20 20 H 1.09004 * 109.47078 * 329.99733 * 1 2 3 21 21 H 1.07999 * 119.83845 * 359.97438 * 3 2 1 22 22 H 0.97006 * 120.00259 * 359.97438 * 5 4 3 23 23 H 0.96999 * 120.00323 * 180.02562 * 5 4 3 24 24 H 0.96695 * 114.00702 * 90.00078 * 7 6 4 25 25 H 1.07997 * 120.16906 * 180.02562 * 8 6 4 26 26 H 0.97004 * 120.00142 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.1816 0.0000 4 6 3.5821 1.1905 -0.0005 5 7 4.2666 2.4003 -0.0011 6 6 4.2960 -0.0152 -0.0005 7 8 5.6556 -0.0008 -0.0016 8 6 3.6198 -1.2142 0.0005 9 6 2.2109 -1.2202 0.0060 10 6 1.5077 -2.4436 0.0114 11 1 0.5070 -2.4932 -0.3922 12 6 2.1064 -3.5919 0.5393 13 7 3.1744 -3.4874 1.2892 14 14 1.3820 -5.2746 0.1747 15 1 1.9991 -5.8222 -1.0601 16 1 1.6565 -6.1888 1.3125 17 1 -0.0852 -5.1509 -0.0180 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3632 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6453 2.1151 -0.0004 22 1 3.7743 3.2361 -0.0014 23 1 5.2366 2.4088 -0.0018 24 1 6.0497 0.0038 0.8814 25 1 4.1664 -2.1456 0.0009 26 1 3.5895 -4.2839 1.6557 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = -35.236332 kcal Electronic energy + Delta-G solvation = -11794.048914 eV Core-core repulsion = 9643.961419 eV Total energy + Delta-G solvation = -2150.087495 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.45594 -35.83443 -34.14465 -32.60657 -30.01104 -28.36786 -25.65291 -23.95783 -21.06443 -19.79454 -17.76631 -16.24733 -15.97690 -15.05534 -14.81880 -13.95631 -13.42516 -12.75134 -12.52805 -12.34602 -11.88377 -11.42320 -11.11864 -11.07311 -10.89330 -10.55459 -10.11960 -9.64819 -9.35382 -9.16613 -8.65221 -7.21699 -6.65398 -6.37771 -4.08391 2.79148 2.95493 3.14840 3.17907 3.31429 4.04049 4.64780 4.98430 5.41646 5.72046 6.18221 6.41733 6.56602 6.68951 6.83424 7.05902 7.16773 7.29477 7.49212 7.63849 7.78131 8.05098 8.20513 8.47512 8.56473 8.80203 8.91832 9.02639 9.13960 10.35876 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.044129 B = 0.013113 C = 0.010399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.354399 B = 2134.845698 C = 2691.980334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.157 4.157 3 C -0.155 4.155 4 C 0.082 3.918 5 N -0.892 5.892 6 C 0.034 3.966 7 O -0.507 6.507 8 C -0.141 4.141 9 C 0.084 3.916 10 C -0.461 4.461 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.809 5.809 14 Si 0.906 3.094 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.264 1.264 18 H 0.043 0.957 19 H 0.063 0.937 20 H 0.037 0.963 21 H 0.091 0.909 22 H 0.381 0.619 23 H 0.385 0.615 24 H 0.362 0.638 25 H 0.128 0.872 26 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 3.747 -0.034 3.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.159 4.159 3 C -0.177 4.177 4 C -0.018 4.018 5 N -0.436 5.436 6 C -0.013 4.013 7 O -0.314 6.314 8 C -0.162 4.162 9 C 0.081 3.919 10 C -0.492 4.492 11 H 0.096 0.904 12 C -0.143 4.143 13 N -0.436 5.436 14 Si 0.731 3.269 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.188 1.188 18 H 0.062 0.938 19 H 0.082 0.918 20 H 0.056 0.944 21 H 0.109 0.891 22 H 0.207 0.793 23 H 0.212 0.788 24 H 0.214 0.786 25 H 0.146 0.854 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.023 3.491 -0.515 3.529 hybrid contribution 0.073 -0.456 0.485 0.670 sum 0.050 3.035 -0.030 3.035 Atomic orbital electron populations 1.20434 0.93425 1.00656 0.99788 1.19376 0.94436 0.92651 1.09477 1.19588 0.91107 0.96727 1.10291 1.17664 0.91190 0.85310 1.07637 1.41715 1.07736 1.04473 1.89625 1.17997 0.80943 0.91601 1.10775 1.84794 1.18106 1.96664 1.31836 1.21450 0.94745 0.95790 1.04168 1.17207 0.90921 0.91794 0.91990 1.19362 1.01665 0.92448 1.35724 0.90443 1.25824 0.94485 1.01037 0.92904 1.69833 1.18549 1.31058 1.24188 0.86359 0.80306 0.81542 0.78705 1.19541 1.20572 1.18807 0.93833 0.91768 0.94386 0.89076 0.79348 0.78816 0.78601 0.85437 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.39 36.01 0.34 -1.46 15 2 C -0.16 -3.83 5.90 -104.29 -0.62 -4.45 15 3 C -0.15 -3.52 9.44 -39.82 -0.38 -3.89 15 4 C 0.08 1.85 6.78 -83.49 -0.57 1.29 15 5 N -0.89 -16.06 9.04 32.61 0.29 -15.77 15 6 C 0.03 0.83 6.72 -39.09 -0.26 0.57 15 7 O -0.51 -10.90 12.73 -19.64 -0.25 -11.15 15 8 C -0.14 -3.79 8.60 -38.79 -0.33 -4.12 15 9 C 0.08 2.26 5.57 -106.81 -0.59 1.67 15 10 C -0.46 -12.29 8.11 -37.89 -0.31 -12.60 15 11 H 0.08 1.98 6.83 -52.48 -0.36 1.62 15 12 C 0.07 1.86 5.18 -17.34 -0.09 1.77 15 13 N -0.81 -21.35 10.88 55.54 0.60 -20.74 15 14 Si 0.91 19.17 29.59 -169.99 -5.03 14.14 15 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 18 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.06 1.36 6.74 -51.93 -0.35 1.01 15 20 H 0.04 0.69 8.08 -51.93 -0.42 0.27 15 21 H 0.09 1.83 8.06 -52.49 -0.42 1.41 15 22 H 0.38 5.87 8.83 -40.82 -0.36 5.51 15 23 H 0.39 6.38 8.16 -40.82 -0.33 6.05 15 24 H 0.36 6.25 9.06 45.56 0.41 6.67 15 25 H 0.13 3.59 6.15 -52.49 -0.32 3.26 15 26 H 0.28 6.70 8.30 -40.82 -0.34 6.36 15 LS Contribution 227.60 15.07 3.43 3.43 Total: -1.00 -29.07 227.60 -5.47 -34.54 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -1.71 Total: 16.78 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.81 Total: -21.23 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.90 Total: -36.51 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.25 Total: -11.15 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.07 -5.47 -34.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.700 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds