Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36403 * 119.97104 * 2 1 4 4 C 1.39374 * 120.33697 * 180.02562 * 3 2 1 5 5 N 1.38995 * 119.86767 * 179.97438 * 4 3 2 6 6 C 1.40118 * 120.26351 * 359.97438 * 4 3 2 7 7 O 1.35968 * 120.02372 * 179.97438 * 6 4 3 8 8 C 1.37656 * 119.94792 * 359.97438 * 6 4 3 9 9 C 1.40869 * 119.97878 * 179.71979 * 2 1 3 10 10 C 1.41113 * 120.13051 * 0.02562 * 9 2 1 11 11 H 1.08007 * 120.00380 * 25.54975 * 10 9 2 12 12 C 1.39844 * 119.99723 * 205.54841 * 10 9 2 13 13 N 1.30912 * 120.00062 * 15.28209 * 12 10 9 14 14 Si 1.86798 * 119.99898 * 195.27491 * 12 10 9 15 15 H 1.48499 * 109.47171 * 90.00591 * 14 12 10 16 16 H 1.48509 * 109.47263 * 210.00124 * 14 12 10 17 17 H 1.48500 * 109.47643 * 330.00198 * 14 12 10 18 18 H 1.09000 * 109.47296 * 90.00553 * 1 2 3 19 19 H 1.09005 * 109.46457 * 210.00111 * 1 2 3 20 20 H 1.09004 * 109.47078 * 329.99733 * 1 2 3 21 21 H 1.07999 * 119.83845 * 359.97438 * 3 2 1 22 22 H 0.97006 * 120.00259 * 359.97438 * 5 4 3 23 23 H 0.96999 * 120.00323 * 180.02562 * 5 4 3 24 24 H 0.96695 * 114.00702 * 90.00078 * 7 6 4 25 25 H 1.07997 * 120.16906 * 180.02562 * 8 6 4 26 26 H 0.97004 * 120.00142 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.1816 0.0000 4 6 3.5821 1.1905 -0.0005 5 7 4.2666 2.4003 -0.0011 6 6 4.2960 -0.0152 -0.0005 7 8 5.6556 -0.0008 -0.0016 8 6 3.6198 -1.2142 0.0005 9 6 2.2109 -1.2202 0.0060 10 6 1.5077 -2.4436 0.0114 11 1 0.5070 -2.4932 -0.3922 12 6 2.1064 -3.5919 0.5393 13 7 3.1744 -3.4874 1.2892 14 14 1.3820 -5.2746 0.1747 15 1 1.9991 -5.8222 -1.0601 16 1 1.6565 -6.1888 1.3125 17 1 -0.0852 -5.1509 -0.0180 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3632 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5139 21 1 1.6453 2.1151 -0.0004 22 1 3.7743 3.2361 -0.0014 23 1 5.2366 2.4088 -0.0018 24 1 6.0497 0.0038 0.8814 25 1 4.1664 -2.1456 0.0009 26 1 3.5895 -4.2839 1.6557 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = -56.420088 kcal Electronic energy + Delta-G solvation = -11794.967510 eV Core-core repulsion = 9643.961419 eV Total energy + Delta-G solvation = -2151.006092 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.25969 -37.61473 -35.91331 -34.38615 -31.81164 -30.18648 -27.43840 -25.79513 -22.93376 -21.58207 -19.59262 -18.09763 -17.65782 -16.77646 -16.58847 -15.71363 -15.16224 -14.55761 -14.27087 -14.10160 -13.64409 -13.16826 -12.89109 -12.76845 -12.63760 -12.23390 -11.86148 -11.51598 -11.18236 -10.98430 -10.46701 -9.07123 -8.53154 -8.16894 -6.02147 0.94591 1.13598 1.41729 1.53736 1.57593 2.27948 2.78700 3.44774 3.63828 3.85006 4.44138 4.72438 4.88220 5.06799 5.08386 5.29794 5.35739 5.43387 5.66633 5.84388 5.89195 6.17745 6.34571 6.65338 6.82595 7.06427 7.10944 7.33754 7.38655 8.49730 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.044129 B = 0.013113 C = 0.010399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.354399 B = 2134.845698 C = 2691.980334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.165 4.165 3 C -0.162 4.162 4 C 0.092 3.908 5 N -0.874 5.874 6 C 0.020 3.980 7 O -0.508 6.508 8 C -0.171 4.171 9 C 0.046 3.954 10 C -0.491 4.491 11 H 0.078 0.922 12 C 0.028 3.972 13 N -0.843 5.843 14 Si 0.976 3.024 15 H -0.269 1.269 16 H -0.273 1.273 17 H -0.256 1.256 18 H 0.057 0.943 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.124 0.876 22 H 0.398 0.602 23 H 0.395 0.605 24 H 0.382 0.618 25 H 0.102 0.898 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 4.891 -0.182 4.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.167 4.167 3 C -0.184 4.184 4 C -0.010 4.010 5 N -0.419 5.419 6 C -0.028 4.028 7 O -0.317 6.317 8 C -0.192 4.192 9 C 0.043 3.957 10 C -0.523 4.523 11 H 0.096 0.904 12 C -0.184 4.184 13 N -0.471 5.471 14 Si 0.798 3.202 15 H -0.194 1.194 16 H -0.198 1.198 17 H -0.180 1.180 18 H 0.076 0.924 19 H 0.071 0.929 20 H 0.084 0.916 21 H 0.142 0.858 22 H 0.226 0.774 23 H 0.223 0.777 24 H 0.236 0.764 25 H 0.120 0.880 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.616 4.688 -0.655 4.773 hybrid contribution 0.342 -0.630 0.536 0.895 sum -0.274 4.058 -0.118 4.069 Atomic orbital electron populations 1.20433 0.91145 1.01430 1.00888 1.19850 0.96412 0.92411 1.08068 1.19946 0.91379 0.97545 1.09559 1.17783 0.91538 0.86203 1.05448 1.41615 1.08349 1.03683 1.88256 1.18047 0.81930 0.91670 1.11157 1.84724 1.16872 1.96588 1.33535 1.21383 0.95196 0.95891 1.06693 1.17572 0.91343 0.93178 0.93577 1.19595 1.02095 0.93525 1.37044 0.90370 1.26652 0.94850 1.04574 0.92315 1.69917 1.19908 1.32135 1.25171 0.85284 0.79699 0.76699 0.78475 1.19407 1.19776 1.18006 0.92440 0.92944 0.91611 0.85774 0.77356 0.77707 0.76428 0.87997 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.28 9.39 71.24 0.67 -2.61 15 2 C -0.17 -7.91 5.90 -19.65 -0.12 -8.03 15 3 C -0.16 -6.97 9.44 22.11 0.21 -6.76 15 4 C 0.09 3.98 6.78 38.74 0.26 4.25 15 5 N -0.87 -28.60 9.04 -50.76 -0.46 -29.06 15 6 C 0.02 0.96 6.72 22.59 0.15 1.11 15 7 O -0.51 -21.46 12.73 -93.19 -1.19 -22.64 15 8 C -0.17 -9.43 8.60 22.78 0.20 -9.23 15 9 C 0.05 2.54 5.57 -21.28 -0.12 2.43 15 10 C -0.49 -26.83 8.11 23.36 0.19 -26.64 15 11 H 0.08 4.07 6.83 -2.91 -0.02 4.05 15 12 C 0.03 1.44 5.18 85.22 0.44 1.89 15 13 N -0.84 -45.93 10.88 21.81 0.24 -45.69 15 14 Si 0.98 39.89 29.59 68.60 2.03 41.92 15 15 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 17 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 18 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 19 H 0.05 2.19 6.74 -2.38 -0.02 2.17 15 20 H 0.06 2.21 8.08 -2.39 -0.02 2.19 15 21 H 0.12 4.46 8.06 -2.91 -0.02 4.44 15 22 H 0.40 10.64 8.83 -92.70 -0.82 9.82 15 23 H 0.39 11.81 8.16 -92.71 -0.76 11.05 15 24 H 0.38 12.79 9.06 -74.06 -0.67 12.12 15 25 H 0.10 6.03 6.15 -2.91 -0.02 6.01 15 26 H 0.28 14.00 8.30 -92.71 -0.77 13.23 15 Total: -1.00 -62.80 227.60 1.50 -61.31 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -1.01 Total: 37.76 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 1.88 Total: -43.60 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -0.22 Total: -74.75 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.19 Total: -22.64 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -62.80 1.50 -61.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.889 kcal (2) G-P(sol) polarization free energy of solvation -62.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds