Wall clock time and date at job start Mon Mar 30 2020 01:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36520 * 119.96823 * 2 1 4 4 C 1.39064 * 120.38086 * 180.02562 * 3 2 1 5 5 O 1.35737 * 119.84827 * 179.97438 * 4 3 2 6 6 C 1.40043 * 120.30048 * 359.97438 * 4 3 2 7 7 N 1.39858 * 120.03746 * 180.02562 * 6 4 3 8 8 C 1.37944 * 119.92491 * 0.02562 * 6 4 3 9 9 C 1.40805 * 119.62832 * 0.02562 * 8 6 4 10 10 C 1.41195 * 120.14884 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99835 * 205.53206 * 10 9 8 12 12 C 1.39865 * 120.00396 * 25.53236 * 10 9 8 13 13 N 1.30895 * 119.99613 * 15.34162 * 12 10 9 14 14 Si 1.86798 * 120.00193 * 195.34199 * 12 10 9 15 15 H 1.48501 * 109.47164 * 59.99770 * 14 12 10 16 16 H 1.48496 * 109.46894 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47137 * 300.00035 * 14 12 10 18 18 H 1.09000 * 109.47473 * 90.00394 * 1 2 3 19 19 H 1.09004 * 109.47068 * 210.00255 * 1 2 3 20 20 H 1.08997 * 109.47203 * 329.99871 * 1 2 3 21 21 H 1.07998 * 119.80892 * 0.04208 * 3 2 1 22 22 H 0.96700 * 114.00235 * 269.97593 * 5 4 3 23 23 H 0.97003 * 120.00175 * 179.97438 * 7 6 4 24 24 H 0.97002 * 119.99873 * 359.97438 * 7 6 4 25 25 H 1.08000 * 120.18558 * 179.72439 * 8 6 4 26 26 H 0.96993 * 120.00162 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1827 0.0000 4 6 3.5796 1.1927 -0.0005 5 8 4.2466 2.3748 -0.0011 6 6 4.2948 -0.0113 -0.0005 7 7 5.6933 0.0052 -0.0005 8 6 3.6184 -1.2135 -0.0005 9 6 2.2104 -1.2201 -0.0011 10 6 1.5069 -2.4443 -0.0017 11 1 0.5063 -2.4919 -0.4052 12 6 2.1059 -3.5954 0.5204 13 7 3.1732 -3.4946 1.2713 14 14 1.3827 -5.2765 0.1459 15 1 1.3896 -5.5026 -1.3218 16 1 2.1968 -6.3249 0.8116 17 1 -0.0129 -5.3384 0.6496 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8899 0.5138 21 1 1.6453 2.1159 0.0007 22 1 4.4399 2.7170 -0.8846 23 1 6.1882 -0.8291 -0.0002 24 1 6.1683 0.8509 -0.0009 25 1 4.1658 -2.1446 -0.0050 26 1 3.5885 -4.2927 1.6337 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719132.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:55 Heat of formation + Delta-G solvation = -58.880763 kcal Electronic energy + Delta-G solvation = -11791.043169 eV Core-core repulsion = 9639.930374 eV Total energy + Delta-G solvation = -2151.112795 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17046 -37.55832 -35.50823 -35.03358 -31.02574 -30.79914 -27.35041 -25.77013 -23.05571 -21.47698 -19.22326 -18.51418 -17.70688 -16.90170 -16.27949 -15.71983 -15.16618 -14.60481 -14.19008 -14.08922 -13.40135 -13.26260 -13.00742 -12.75498 -12.58954 -12.21601 -11.95283 -11.46039 -11.14951 -10.91787 -10.56962 -9.13012 -8.61660 -7.92421 -6.27034 0.97593 1.27814 1.41346 1.52105 1.56682 2.23846 2.75353 3.36386 3.69356 3.94822 4.45817 4.78178 4.92759 5.09478 5.18370 5.23539 5.37511 5.46433 5.61072 5.88405 6.02895 6.16466 6.30925 6.59831 6.87458 6.96697 7.04215 7.32677 7.42118 8.38446 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.044310 B = 0.013041 C = 0.010367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.759476 B = 2146.541205 C = 2700.211819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.239 4.239 3 C -0.082 4.082 4 C -0.108 4.108 5 O -0.499 6.499 6 C 0.196 3.804 7 N -0.874 5.874 8 C -0.256 4.256 9 C 0.109 3.891 10 C -0.484 4.484 11 H 0.083 0.917 12 C 0.033 3.967 13 N -0.823 5.823 14 Si 0.981 3.019 15 H -0.261 1.261 16 H -0.271 1.271 17 H -0.259 1.259 18 H 0.053 0.947 19 H 0.049 0.951 20 H 0.056 0.944 21 H 0.115 0.885 22 H 0.369 0.631 23 H 0.395 0.605 24 H 0.398 0.602 25 H 0.107 0.893 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 1.672 -3.242 3.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.242 4.242 3 C -0.101 4.101 4 C -0.156 4.156 5 O -0.306 6.306 6 C 0.093 3.907 7 N -0.416 5.416 8 C -0.280 4.280 9 C 0.106 3.894 10 C -0.513 4.513 11 H 0.101 0.899 12 C -0.182 4.182 13 N -0.449 5.449 14 Si 0.802 3.198 15 H -0.185 1.185 16 H -0.196 1.196 17 H -0.183 1.183 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.133 0.867 22 H 0.222 0.778 23 H 0.222 0.778 24 H 0.227 0.773 25 H 0.125 0.875 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.544 1.492 -2.466 2.933 hybrid contribution 0.394 -0.652 -0.472 0.896 sum 0.938 0.839 -2.938 3.196 Atomic orbital electron populations 1.20321 0.91389 1.00918 1.00487 1.19687 0.96291 0.92483 1.15734 1.20484 0.92814 0.97159 0.99664 1.17667 0.89847 0.83177 1.24912 1.84799 1.77293 1.35656 1.32886 1.18123 0.84624 0.93350 0.94641 1.42100 1.02497 1.10276 1.86698 1.20651 0.94734 0.94715 1.17938 1.17665 0.91763 0.92802 0.87183 1.19776 1.02066 0.93359 1.36142 0.89897 1.26790 0.94573 1.04882 0.91941 1.69946 1.18984 1.32666 1.23273 0.85269 0.79216 0.75741 0.79579 1.18510 1.19573 1.18289 0.92833 0.93163 0.92465 0.86715 0.77829 0.77760 0.77341 0.87547 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.07 9.38 71.24 0.67 -2.41 15 2 C -0.24 -11.79 5.91 -19.63 -0.12 -11.90 15 3 C -0.08 -3.80 9.54 22.07 0.21 -3.59 15 4 C -0.11 -4.96 6.75 22.91 0.15 -4.80 15 5 O -0.50 -19.39 12.73 -90.61 -1.15 -20.54 15 6 C 0.20 9.37 6.76 38.23 0.26 9.63 15 7 N -0.87 -33.31 9.08 -51.14 -0.46 -33.77 15 8 C -0.26 -13.67 8.51 22.83 0.19 -13.47 15 9 C 0.11 5.93 5.57 -21.29 -0.12 5.81 15 10 C -0.48 -25.74 8.12 23.39 0.19 -25.55 15 11 H 0.08 4.19 6.84 -2.91 -0.02 4.17 15 12 C 0.03 1.65 5.18 85.23 0.44 2.09 15 13 N -0.82 -43.16 10.87 21.81 0.24 -42.92 15 14 Si 0.98 37.93 29.59 68.60 2.03 39.96 15 15 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 16 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 18 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 19 H 0.05 2.14 6.75 -2.39 -0.02 2.12 15 20 H 0.06 2.07 8.08 -2.39 -0.02 2.05 15 21 H 0.11 4.67 8.06 -2.91 -0.02 4.65 15 22 H 0.37 10.78 9.06 -74.06 -0.67 10.10 15 23 H 0.39 13.90 8.84 -92.71 -0.82 13.08 15 24 H 0.40 13.10 8.19 -92.71 -0.76 12.34 15 25 H 0.11 5.91 6.15 -2.91 -0.02 5.89 15 26 H 0.29 13.60 8.30 -92.71 -0.77 12.83 15 Total: -1.00 -61.14 227.71 1.52 -59.62 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -1.01 Total: 41.84 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 1.88 Total: -44.19 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -0.23 Total: -76.70 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.15 Total: -20.54 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -61.14 1.52 -59.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719132.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.744 kcal (2) G-P(sol) polarization free energy of solvation -61.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds