Wall clock time and date at job start Mon Mar 30 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37693 * 120.16281 * 2 1 4 4 O 1.35974 * 120.02851 * 359.97438 * 3 2 1 5 5 C 1.40079 * 119.94204 * 179.70440 * 3 2 1 6 6 N 1.39004 * 119.86861 * 180.25751 * 5 3 2 7 7 C 1.39410 * 120.26914 * 0.27740 * 5 3 2 8 8 C 1.36363 * 120.33442 * 359.97438 * 7 5 3 9 9 C 1.40859 * 120.16628 * 180.22669 * 2 1 3 10 10 C 1.41121 * 120.13212 * 0.02562 * 9 2 1 11 11 H 1.07994 * 120.00003 * 25.92529 * 10 9 2 12 12 C 1.39842 * 119.99750 * 205.92787 * 10 9 2 13 13 N 1.30919 * 119.99940 * 15.52547 * 12 10 9 14 14 Si 1.86795 * 119.99835 * 195.53073 * 12 10 9 15 15 H 1.48502 * 109.47380 * 59.99693 * 14 12 10 16 16 H 1.48505 * 109.46917 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47205 * 299.99582 * 14 12 10 18 18 H 1.08995 * 109.47359 * 89.99963 * 1 2 3 19 19 H 1.09001 * 109.46920 * 209.99773 * 1 2 3 20 20 H 1.09004 * 109.47071 * 329.99511 * 1 2 3 21 21 H 0.96697 * 113.99338 * 269.72225 * 4 3 2 22 22 H 0.97004 * 119.99894 * 359.97438 * 6 5 3 23 23 H 0.96997 * 120.00536 * 180.02562 * 6 5 3 24 24 H 1.07996 * 119.83173 * 180.02562 * 7 5 3 25 25 H 1.08001 * 119.97901 * 180.02562 * 8 7 5 26 26 H 0.97004 * 119.99580 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1905 0.0000 4 8 1.5229 2.3703 -0.0005 5 6 3.5996 1.1851 0.0063 6 7 4.2965 2.3878 0.0117 7 6 4.2977 -0.0216 0.0067 8 6 3.6238 -1.2071 0.0015 9 6 2.2148 -1.2178 -0.0048 10 6 1.5156 -2.4436 -0.0102 11 1 0.5176 -2.4941 -0.4197 12 6 2.1151 -3.5928 0.5148 13 7 3.1757 -3.4887 1.2752 14 14 1.4026 -5.2763 0.1308 15 1 1.4233 -5.4995 -1.3372 16 1 2.2156 -6.3225 0.8016 17 1 0.0031 -5.3454 0.6224 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.3315 2.7134 -0.8841 22 1 3.8128 3.2286 0.0107 23 1 5.2665 2.3864 0.0156 24 1 5.3777 -0.0175 0.0119 25 1 4.1704 -2.1386 0.0023 26 1 3.5917 -4.2859 1.6390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719166.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:32 Heat of formation + Delta-G solvation = -55.177357 kcal Electronic energy + Delta-G solvation = -11822.682789 eV Core-core repulsion = 9671.730586 eV Total energy + Delta-G solvation = -2150.952203 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.33381 -37.41695 -35.94655 -34.35178 -32.11034 -29.79179 -27.60884 -25.94633 -22.64463 -21.67901 -19.59139 -18.16871 -17.39301 -16.92122 -16.67297 -15.78651 -15.23859 -14.79066 -13.98058 -13.84305 -13.48532 -13.22507 -12.94720 -12.83570 -12.71923 -12.20448 -11.88536 -11.62703 -11.15662 -10.89445 -10.46913 -9.05325 -8.51533 -8.18567 -6.01836 0.98189 1.10795 1.42477 1.53021 1.58865 2.28640 2.79797 3.46159 3.66930 3.80938 4.44920 4.71372 4.90783 5.01267 5.07030 5.27292 5.29940 5.45539 5.75018 5.82996 5.91104 6.13868 6.34961 6.69868 6.84688 7.03378 7.11112 7.36365 7.38697 8.49786 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.052988 B = 0.012161 C = 0.010164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.292896 B = 2301.961623 C = 2754.172120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.197 4.197 3 C 0.036 3.964 4 O -0.499 6.499 5 C 0.092 3.908 6 N -0.874 5.874 7 C -0.176 4.176 8 C -0.142 4.142 9 C 0.047 3.953 10 C -0.493 4.493 11 H 0.075 0.925 12 C 0.030 3.970 13 N -0.843 5.843 14 Si 0.977 3.023 15 H -0.262 1.262 16 H -0.273 1.273 17 H -0.262 1.262 18 H 0.056 0.944 19 H 0.049 0.951 20 H 0.057 0.943 21 H 0.383 0.617 22 H 0.397 0.603 23 H 0.396 0.604 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 4.669 -3.470 5.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.199 4.199 3 C -0.012 4.012 4 O -0.309 6.309 5 C -0.010 4.010 6 N -0.419 5.419 7 C -0.198 4.198 8 C -0.162 4.162 9 C 0.044 3.956 10 C -0.524 4.524 11 H 0.093 0.907 12 C -0.182 4.182 13 N -0.471 5.471 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.187 1.187 18 H 0.075 0.925 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.238 0.762 22 H 0.225 0.775 23 H 0.224 0.776 24 H 0.130 0.870 25 H 0.123 0.877 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.221 4.407 -2.707 5.176 hybrid contribution 0.139 -0.486 -0.450 0.677 sum -0.082 3.921 -3.157 5.034 Atomic orbital electron populations 1.20228 0.91387 1.00858 1.00582 1.20233 0.96395 0.92053 1.11262 1.17559 0.87947 0.84678 1.11016 1.84739 1.76620 1.35980 1.33514 1.17780 0.90370 0.87399 1.05498 1.41617 1.07945 1.04083 1.88257 1.20157 0.98405 0.91443 1.09803 1.20978 0.94827 0.96611 1.03810 1.17593 0.92140 0.92455 0.93399 1.19540 1.02272 0.93417 1.37137 0.90678 1.26643 0.94771 1.04565 0.92208 1.69915 1.20088 1.32354 1.24763 0.85324 0.79021 0.76298 0.79436 1.18639 1.19732 1.18653 0.92486 0.93239 0.92428 0.76216 0.77496 0.77592 0.87019 0.87679 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.15 9.17 71.24 0.65 -2.50 15 2 C -0.20 -9.74 5.94 -19.35 -0.12 -9.86 15 3 C 0.04 1.63 6.69 22.59 0.15 1.78 15 4 O -0.50 -18.42 11.76 -93.26 -1.10 -19.52 15 5 C 0.09 3.96 6.78 38.73 0.26 4.22 15 6 N -0.87 -28.66 9.04 -50.75 -0.46 -29.12 15 7 C -0.18 -8.24 9.81 22.11 0.22 -8.02 15 8 C -0.14 -7.62 8.62 22.49 0.19 -7.43 15 9 C 0.05 2.59 5.57 -21.28 -0.12 2.47 15 10 C -0.49 -26.92 8.11 23.37 0.19 -26.73 15 11 H 0.08 3.94 6.87 -2.91 -0.02 3.92 15 12 C 0.03 1.55 5.17 85.22 0.44 1.99 15 13 N -0.84 -45.61 10.88 21.81 0.24 -45.37 15 14 Si 0.98 39.50 29.59 68.60 2.03 41.53 15 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 16 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 17 H -0.26 -10.26 7.11 99.48 0.71 -9.56 15 18 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 19 H 0.05 2.20 6.79 -2.39 -0.02 2.19 15 20 H 0.06 2.26 7.52 -2.39 -0.02 2.24 15 21 H 0.38 10.42 9.06 -74.06 -0.67 9.75 15 22 H 0.40 11.44 8.16 -92.71 -0.76 10.68 15 23 H 0.40 11.06 8.83 -92.71 -0.82 10.24 15 24 H 0.11 4.62 8.06 -2.91 -0.02 4.60 15 25 H 0.11 5.90 6.14 -2.91 -0.02 5.88 15 26 H 0.28 13.96 8.30 -92.71 -0.77 13.19 15 Total: -1.00 -62.24 226.33 1.58 -60.66 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -1.01 Total: 35.88 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 1.87 Total: -44.06 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -0.22 Total: -74.49 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.10 Total: -19.52 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -62.24 1.58 -60.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719166.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.484 kcal (2) G-P(sol) polarization free energy of solvation -62.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds