Wall clock time and date at job start Mon Mar 30 2020 01:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39257 * 120.01250 * 2 1 4 4 N 1.38920 * 119.79625 * 359.97438 * 3 2 1 5 5 C 1.39682 * 120.40762 * 180.02562 * 3 2 1 6 6 C 1.36260 * 120.42878 * 359.97438 * 5 3 2 7 7 C 1.40828 * 120.00745 * 359.76596 * 6 5 3 8 8 C 1.40964 * 120.19719 * 180.27897 * 7 6 5 9 9 H 1.08011 * 120.00164 * 204.98948 * 8 7 6 10 10 C 1.39844 * 120.00640 * 24.98645 * 8 7 6 11 11 N 1.30954 * 119.99424 * 17.70019 * 10 8 7 12 12 Si 1.86801 * 120.00515 * 197.69876 * 10 8 7 13 13 H 1.48504 * 109.46706 * 90.00003 * 12 10 8 14 14 H 1.48498 * 109.46924 * 210.00271 * 12 10 8 15 15 H 1.48496 * 109.46735 * 330.00314 * 12 10 8 16 16 C 1.38008 * 120.01036 * 180.02562 * 2 1 3 17 17 O 1.35668 * 120.20769 * 359.97438 * 16 2 1 18 18 H 1.09003 * 109.46752 * 269.98165 * 1 2 3 19 19 H 1.08995 * 109.47148 * 29.97798 * 1 2 3 20 20 H 1.09000 * 109.47378 * 149.98048 * 1 2 3 21 21 H 0.97000 * 119.99806 * 0.02562 * 4 3 2 22 22 H 0.97005 * 120.00335 * 180.02562 * 4 3 2 23 23 H 1.07994 * 119.78603 * 179.97438 * 5 3 2 24 24 H 1.08001 * 119.99539 * 180.02562 * 6 5 3 25 25 H 0.96999 * 119.99895 * 179.97438 * 11 10 8 26 26 H 0.96708 * 113.99844 * 90.00774 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2035 1.2058 0.0000 4 7 1.5049 2.4066 -0.0005 5 6 3.6003 1.2155 -0.0005 6 6 4.2985 0.0454 -0.0005 7 6 3.6122 -1.1843 0.0050 8 6 4.3305 -2.3972 0.0109 9 1 3.8763 -3.2958 -0.3802 10 6 5.6311 -2.4372 0.5231 11 7 6.0591 -1.4730 1.2990 12 14 6.7579 -3.8660 0.1006 13 1 7.5198 -3.5472 -1.1336 14 1 7.7046 -4.0978 1.2210 15 1 5.9449 -5.0886 -0.1215 16 6 2.1972 -1.1951 -0.0005 17 8 1.5234 -2.3726 -0.0005 18 1 -0.3633 -0.0003 1.0277 19 1 -0.3633 0.8901 -0.5135 20 1 -0.3634 -0.8898 -0.5141 21 1 0.5349 2.4033 -0.0005 22 1 1.9871 3.2483 -0.0009 23 1 4.1303 2.1564 -0.0010 24 1 5.3784 0.0610 -0.0005 25 1 6.9611 -1.5009 1.6546 26 1 1.3278 -2.7138 -0.8840 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719210.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:21 Heat of formation + Delta-G solvation = -53.336542 kcal Electronic energy + Delta-G solvation = -11819.715874 eV Core-core repulsion = 9668.843495 eV Total energy + Delta-G solvation = -2150.872379 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.27256 -37.46831 -36.18349 -33.80176 -32.29741 -30.18721 -27.29583 -26.06445 -22.52292 -21.92165 -18.88008 -18.71125 -17.84718 -16.72326 -16.52379 -15.51992 -15.16376 -14.92588 -14.22639 -13.89892 -13.67647 -13.24831 -12.79173 -12.78062 -12.59350 -12.37823 -12.09332 -11.51788 -11.22524 -10.80213 -10.48345 -9.05268 -8.54838 -8.23775 -5.99496 0.94642 1.11391 1.39862 1.52908 1.57333 2.27319 2.80271 3.42956 3.65795 4.06134 4.38268 4.46683 4.76595 4.90410 5.06498 5.11010 5.31638 5.49115 5.67627 5.80720 5.87853 6.11835 6.35502 6.59177 6.92767 7.03875 7.08722 7.38871 7.48442 8.47319 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.053083 B = 0.012195 C = 0.010207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.352800 B = 2295.518886 C = 2742.675050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.176 4.176 3 C 0.124 3.876 4 N -0.875 5.875 5 C -0.183 4.183 6 C -0.134 4.134 7 C 0.015 3.985 8 C -0.490 4.490 9 H 0.068 0.932 10 C 0.028 3.972 11 N -0.842 5.842 12 Si 0.980 3.020 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.262 1.262 16 C 0.007 3.993 17 O -0.498 6.498 18 H 0.055 0.945 19 H 0.073 0.927 20 H 0.061 0.939 21 H 0.397 0.603 22 H 0.397 0.603 23 H 0.112 0.888 24 H 0.104 0.896 25 H 0.283 0.717 26 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 3.333 -3.578 6.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.182 4.182 3 C 0.022 3.978 4 N -0.421 5.421 5 C -0.205 4.205 6 C -0.155 4.155 7 C 0.012 3.988 8 C -0.521 4.521 9 H 0.087 0.913 10 C -0.183 4.183 11 N -0.471 5.471 12 Si 0.802 3.198 13 H -0.187 1.187 14 H -0.196 1.196 15 H -0.186 1.186 16 C -0.039 4.039 17 O -0.307 6.307 18 H 0.074 0.926 19 H 0.091 0.909 20 H 0.080 0.920 21 H 0.226 0.774 22 H 0.225 0.775 23 H 0.130 0.870 24 H 0.122 0.878 25 H 0.093 0.907 26 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.702 3.393 -2.815 6.445 hybrid contribution 0.613 -0.385 -0.442 0.848 sum -4.089 3.008 -3.257 6.031 Atomic orbital electron populations 1.20323 0.90105 1.02128 1.01257 1.19551 0.96546 0.91187 1.10867 1.17101 0.90415 0.86584 1.03662 1.41805 1.08245 1.03867 1.88178 1.20284 0.92607 0.97652 1.09965 1.20754 0.99127 0.91682 1.03890 1.18143 0.91415 0.94328 0.94908 1.19409 0.99102 0.95887 1.37720 0.91345 1.26657 0.99506 0.99955 0.92221 1.69940 1.18544 1.34236 1.24347 0.85237 0.77612 0.78187 0.78789 1.18659 1.19638 1.18637 1.18446 0.89258 0.84369 1.11874 1.84691 1.76302 1.37134 1.32529 0.92621 0.90861 0.91958 0.77362 0.77498 0.87022 0.87828 0.90721 0.77324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 9.34 71.24 0.67 -2.06 15 2 C -0.18 -7.75 5.90 -19.67 -0.12 -7.87 15 3 C 0.12 5.23 6.74 38.61 0.26 5.49 15 4 N -0.88 -26.99 8.95 -51.15 -0.46 -27.45 15 5 C -0.18 -8.52 9.81 22.16 0.22 -8.30 15 6 C -0.13 -7.27 8.62 22.44 0.19 -7.08 15 7 C 0.02 0.87 5.58 -21.17 -0.12 0.75 15 8 C -0.49 -27.94 8.70 23.33 0.20 -27.74 15 9 H 0.07 3.81 7.64 -2.91 -0.02 3.79 15 10 C 0.03 1.51 5.13 85.21 0.44 1.94 15 11 N -0.84 -46.63 10.97 21.82 0.24 -46.39 15 12 Si 0.98 40.70 29.60 68.60 2.03 42.73 15 13 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 14 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 15 H -0.26 -10.68 7.11 99.48 0.71 -9.98 15 16 C 0.01 0.34 6.70 23.02 0.15 0.49 15 17 O -0.50 -23.13 11.82 -89.85 -1.06 -24.19 15 18 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 19 H 0.07 1.99 6.53 -2.39 -0.02 1.98 15 20 H 0.06 1.99 7.53 -2.39 -0.02 1.97 15 21 H 0.40 10.27 6.78 -92.71 -0.63 9.64 15 22 H 0.40 10.40 8.83 -92.70 -0.82 9.58 15 23 H 0.11 4.56 8.06 -2.91 -0.02 4.54 15 24 H 0.10 5.87 6.17 -2.91 -0.02 5.85 15 25 H 0.28 14.21 8.30 -92.71 -0.77 13.44 15 26 H 0.37 13.72 9.06 -74.05 -0.67 13.05 15 Total: -1.00 -65.53 226.23 1.76 -63.76 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.88 Total: 35.91 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 1.90 Total: -44.37 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -0.22 Total: -73.84 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.06 Total: -24.19 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -65.53 1.76 -63.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719210.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal (2) G-P(sol) polarization free energy of solvation -65.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds