Wall clock time and date at job start Mon Mar 30 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38362 * 120.10653 * 2 1 4 4 N 1.39677 * 119.92335 * 359.97438 * 3 2 1 5 5 C 1.39193 * 120.15534 * 180.02562 * 3 2 1 6 6 C 1.39020 * 120.36798 * 0.02562 * 5 3 2 7 7 O 1.35898 * 119.89262 * 179.97438 * 6 5 3 8 8 C 1.38155 * 120.21300 * 359.69939 * 6 5 3 9 9 C 1.40604 * 120.11169 * 180.02562 * 2 1 3 10 10 C 1.41410 * 120.17801 * 359.96209 * 9 2 1 11 11 H 1.08000 * 120.00115 * 26.66023 * 10 9 2 12 12 C 1.39921 * 119.99763 * 206.66079 * 10 9 2 13 13 N 1.30824 * 120.00126 * 16.27033 * 12 10 9 14 14 Si 1.86807 * 119.99683 * 196.26768 * 12 10 9 15 15 H 1.48497 * 109.47252 * 265.18648 * 14 12 10 16 16 H 1.48498 * 109.47339 * 25.19019 * 14 12 10 17 17 H 1.48500 * 109.46776 * 145.18844 * 14 12 10 18 18 H 1.08998 * 109.47370 * 269.97723 * 1 2 3 19 19 H 1.09002 * 109.47425 * 29.98285 * 1 2 3 20 20 H 1.09007 * 109.47140 * 149.98463 * 1 2 3 21 21 H 0.97002 * 119.99755 * 0.02562 * 4 3 2 22 22 H 0.96998 * 119.99781 * 180.02562 * 4 3 2 23 23 H 1.07995 * 119.81821 * 179.97438 * 5 3 2 24 24 H 0.96703 * 114.00463 * 89.99872 * 7 6 5 25 25 H 1.08000 * 120.08006 * 180.27494 * 8 6 5 26 26 H 0.97002 * 119.99888 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2010 1.1970 0.0000 4 7 1.5032 2.4070 -0.0005 5 6 3.5929 1.1981 -0.0005 6 6 4.2967 -0.0007 -0.0016 7 8 5.6557 0.0117 -0.0027 8 6 3.6192 -1.2047 0.0041 9 6 2.2123 -1.2163 -0.0005 10 6 1.5115 -2.4445 -0.0003 11 1 0.5176 -2.4992 -0.4194 12 6 2.1057 -3.5889 0.5430 13 7 3.1489 -3.4761 1.3243 14 14 1.4091 -5.2777 0.1527 15 1 0.4668 -5.6846 1.2258 16 1 0.6898 -5.2286 -1.1455 17 1 2.5173 -6.2625 0.0675 18 1 -0.3634 -0.0004 1.0276 19 1 -0.3634 0.8901 -0.5136 20 1 -0.3634 -0.8899 -0.5141 21 1 0.5332 2.4074 -0.0005 22 1 1.9887 3.2467 -0.0009 23 1 4.1291 2.1356 -0.0010 24 1 6.0497 0.0149 0.8804 25 1 4.1681 -2.1348 0.0077 26 1 3.5606 -4.2695 1.7012 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719236.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:27 Heat of formation + Delta-G solvation = -35.332157 kcal Electronic energy + Delta-G solvation = -11798.241457 eV Core-core repulsion = 9648.149807 eV Total energy + Delta-G solvation = -2150.091650 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.32596 -36.12299 -34.31147 -32.00095 -30.51165 -27.88966 -25.63026 -24.42695 -20.83366 -19.81917 -17.75727 -16.30511 -16.11287 -14.90457 -14.54732 -13.98157 -13.40541 -13.14367 -12.69011 -12.56226 -11.70615 -11.47470 -11.11829 -10.90812 -10.69942 -10.50652 -10.17545 -9.73459 -9.34659 -9.12600 -8.77774 -7.19505 -6.72930 -6.21804 -4.34444 2.76933 3.04730 3.09929 3.14974 3.32864 3.96112 4.62100 4.83413 5.49799 5.74229 6.25739 6.49511 6.57970 6.72160 6.90291 7.06385 7.15513 7.25846 7.46401 7.69094 7.80233 8.04113 8.19752 8.46503 8.52231 8.71640 8.91468 8.97380 9.12105 10.23503 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.038170 B = 0.014028 C = 0.010586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.380211 B = 1995.521373 C = 2644.371123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.270 4.270 3 C 0.240 3.760 4 N -0.893 5.893 5 C -0.325 4.325 6 C 0.135 3.865 7 O -0.516 6.516 8 C -0.217 4.217 9 C 0.155 3.845 10 C -0.460 4.460 11 H 0.082 0.918 12 C 0.077 3.923 13 N -0.792 5.792 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.261 1.261 17 H -0.276 1.276 18 H 0.039 0.961 19 H 0.029 0.971 20 H 0.057 0.943 21 H 0.387 0.613 22 H 0.383 0.617 23 H 0.090 0.910 24 H 0.372 0.628 25 H 0.121 0.879 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 3.106 0.037 3.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.276 4.276 3 C 0.138 3.862 4 N -0.435 5.435 5 C -0.349 4.349 6 C 0.091 3.909 7 O -0.324 6.324 8 C -0.238 4.238 9 C 0.152 3.848 10 C -0.489 4.489 11 H 0.100 0.900 12 C -0.141 4.141 13 N -0.417 5.417 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.184 1.184 17 H -0.201 1.201 18 H 0.058 0.942 19 H 0.048 0.952 20 H 0.076 0.924 21 H 0.215 0.785 22 H 0.209 0.791 23 H 0.109 0.891 24 H 0.225 0.775 25 H 0.139 0.861 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.766 2.881 -0.437 3.407 hybrid contribution -0.233 -0.414 0.494 0.685 sum -1.999 2.467 0.057 3.175 Atomic orbital electron populations 1.20173 0.93654 0.99567 0.99425 1.19242 0.94137 0.91478 1.22777 1.17062 0.90255 0.85160 0.93676 1.42410 1.08033 1.05112 1.87912 1.19966 0.91866 0.96263 1.26805 1.18098 0.80664 0.92518 0.99628 1.84697 1.18470 1.96909 1.32326 1.21367 0.94641 0.95921 1.11895 1.17049 0.90875 0.91303 0.85593 1.19564 1.02379 0.92428 1.34535 0.90019 1.25904 0.94124 1.01292 0.92805 1.69842 1.18422 1.31673 1.21792 0.86339 0.79397 0.81190 0.80021 1.19644 1.18439 1.20085 0.94212 0.95176 0.92430 0.78460 0.79138 0.89148 0.77475 0.86135 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 9.17 36.00 0.33 -1.15 15 2 C -0.27 -6.64 5.96 -103.69 -0.62 -7.26 15 3 C 0.24 5.49 6.72 -83.88 -0.56 4.92 15 4 N -0.89 -15.90 8.98 32.36 0.29 -15.61 15 5 C -0.33 -7.71 9.83 -38.94 -0.38 -8.10 15 6 C 0.13 3.39 6.69 -39.32 -0.26 3.13 15 7 O -0.52 -11.52 13.49 -19.42 -0.26 -11.78 15 8 C -0.22 -5.91 8.61 -38.69 -0.33 -6.24 15 9 C 0.16 4.20 5.55 -106.87 -0.59 3.60 15 10 C -0.46 -12.17 8.44 -37.75 -0.32 -12.49 15 11 H 0.08 2.06 6.27 -52.49 -0.33 1.73 15 12 C 0.08 1.93 5.15 -17.35 -0.09 1.84 15 13 N -0.79 -20.66 10.99 55.55 0.61 -20.05 15 14 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 15 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 18 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 19 H 0.03 0.53 6.53 -51.93 -0.34 0.19 15 20 H 0.06 1.20 6.26 -51.93 -0.33 0.88 15 21 H 0.39 6.16 6.80 -40.82 -0.28 5.89 15 22 H 0.38 5.86 8.84 -40.82 -0.36 5.50 15 23 H 0.09 1.97 8.06 -52.49 -0.42 1.54 15 24 H 0.37 6.50 9.06 45.56 0.41 6.92 15 25 H 0.12 3.41 6.24 -52.49 -0.33 3.08 15 26 H 0.28 6.63 8.30 -40.82 -0.34 6.29 15 LS Contribution 225.00 15.07 3.39 3.39 Total: -1.00 -29.58 225.00 -5.36 -34.94 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -1.53 Total: 17.11 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -2.83 Total: -21.74 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.90 Total: -35.66 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.26 Total: -11.78 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.58 -5.36 -34.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719236.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.394 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds