Wall clock time and date at job start Mon Mar 30 2020 01:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38362 * 120.10653 * 2 1 4 4 N 1.39677 * 119.92335 * 359.97438 * 3 2 1 5 5 C 1.39193 * 120.15534 * 180.02562 * 3 2 1 6 6 C 1.39020 * 120.36798 * 0.02562 * 5 3 2 7 7 O 1.35898 * 119.89262 * 179.97438 * 6 5 3 8 8 C 1.38155 * 120.21300 * 359.69939 * 6 5 3 9 9 C 1.40604 * 120.11169 * 180.02562 * 2 1 3 10 10 C 1.41410 * 120.17801 * 359.96209 * 9 2 1 11 11 H 1.08000 * 120.00115 * 26.66023 * 10 9 2 12 12 C 1.39921 * 119.99763 * 206.66079 * 10 9 2 13 13 N 1.30824 * 120.00126 * 16.27033 * 12 10 9 14 14 Si 1.86807 * 119.99683 * 196.26768 * 12 10 9 15 15 H 1.48497 * 109.47252 * 265.18648 * 14 12 10 16 16 H 1.48498 * 109.47339 * 25.19019 * 14 12 10 17 17 H 1.48500 * 109.46776 * 145.18844 * 14 12 10 18 18 H 1.08998 * 109.47370 * 269.97723 * 1 2 3 19 19 H 1.09002 * 109.47425 * 29.98285 * 1 2 3 20 20 H 1.09007 * 109.47140 * 149.98463 * 1 2 3 21 21 H 0.97002 * 119.99755 * 0.02562 * 4 3 2 22 22 H 0.96998 * 119.99781 * 180.02562 * 4 3 2 23 23 H 1.07995 * 119.81821 * 179.97438 * 5 3 2 24 24 H 0.96703 * 114.00463 * 89.99872 * 7 6 5 25 25 H 1.08000 * 120.08006 * 180.27494 * 8 6 5 26 26 H 0.97002 * 119.99888 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2010 1.1970 0.0000 4 7 1.5032 2.4070 -0.0005 5 6 3.5929 1.1981 -0.0005 6 6 4.2967 -0.0007 -0.0016 7 8 5.6557 0.0117 -0.0027 8 6 3.6192 -1.2047 0.0041 9 6 2.2123 -1.2163 -0.0005 10 6 1.5115 -2.4445 -0.0003 11 1 0.5176 -2.4992 -0.4194 12 6 2.1057 -3.5889 0.5430 13 7 3.1489 -3.4761 1.3243 14 14 1.4091 -5.2777 0.1527 15 1 0.4668 -5.6846 1.2258 16 1 0.6898 -5.2286 -1.1455 17 1 2.5173 -6.2625 0.0675 18 1 -0.3634 -0.0004 1.0276 19 1 -0.3634 0.8901 -0.5136 20 1 -0.3634 -0.8899 -0.5141 21 1 0.5332 2.4074 -0.0005 22 1 1.9887 3.2467 -0.0009 23 1 4.1291 2.1356 -0.0010 24 1 6.0497 0.0149 0.8804 25 1 4.1681 -2.1348 0.0077 26 1 3.5606 -4.2695 1.7012 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719236.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:27 Heat of formation + Delta-G solvation = -57.045018 kcal Electronic energy + Delta-G solvation = -11799.182997 eV Core-core repulsion = 9648.149807 eV Total energy + Delta-G solvation = -2151.033191 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.16122 -37.90987 -36.13261 -33.79004 -32.30877 -29.68514 -27.51075 -26.24116 -22.70253 -21.65989 -19.57845 -18.13114 -17.83637 -16.68143 -16.24908 -15.85502 -15.18122 -14.89674 -14.47482 -14.28346 -13.47872 -13.24298 -12.80820 -12.58998 -12.51903 -12.17299 -11.92943 -11.59651 -11.17380 -10.97768 -10.60101 -9.10472 -8.59871 -7.97205 -6.31971 0.93116 1.23882 1.40671 1.53139 1.58479 2.23342 2.75583 3.27085 3.69095 3.89998 4.56573 4.74330 4.83410 5.04006 5.13449 5.24243 5.32501 5.39489 5.68514 5.91637 5.99498 6.10957 6.26149 6.59988 6.83500 6.95112 7.07935 7.28526 7.35098 8.38581 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.038170 B = 0.014028 C = 0.010586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.380211 B = 1995.521373 C = 2644.371123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.293 4.293 3 C 0.244 3.756 4 N -0.872 5.872 5 C -0.333 4.333 6 C 0.133 3.867 7 O -0.520 6.520 8 C -0.255 4.255 9 C 0.126 3.874 10 C -0.490 4.490 11 H 0.085 0.915 12 C 0.033 3.967 13 N -0.824 5.824 14 Si 0.980 3.020 15 H -0.261 1.261 16 H -0.258 1.258 17 H -0.270 1.270 18 H 0.043 0.957 19 H 0.061 0.939 20 H 0.050 0.950 21 H 0.400 0.600 22 H 0.399 0.601 23 H 0.112 0.888 24 H 0.394 0.606 25 H 0.097 0.903 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 3.851 -0.086 4.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.299 4.299 3 C 0.140 3.860 4 N -0.415 5.415 5 C -0.357 4.357 6 C 0.089 3.911 7 O -0.331 6.331 8 C -0.277 4.277 9 C 0.123 3.877 10 C -0.519 4.519 11 H 0.103 0.897 12 C -0.182 4.182 13 N -0.450 5.450 14 Si 0.801 3.199 15 H -0.186 1.186 16 H -0.181 1.181 17 H -0.195 1.195 18 H 0.062 0.938 19 H 0.079 0.921 20 H 0.069 0.931 21 H 0.230 0.770 22 H 0.227 0.773 23 H 0.130 0.870 24 H 0.250 0.750 25 H 0.115 0.885 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.712 3.681 -0.546 4.605 hybrid contribution 0.121 -0.503 0.553 0.757 sum -2.591 3.178 0.007 4.101 Atomic orbital electron populations 1.20150 0.91307 1.00770 1.00022 1.19650 0.96126 0.91339 1.22795 1.17146 0.90294 0.86428 0.92098 1.42259 1.08720 1.04148 1.86353 1.20229 0.92537 0.96496 1.26453 1.18233 0.81597 0.92513 0.98793 1.84616 1.17347 1.96845 1.34276 1.21303 0.95174 0.95850 1.15325 1.17445 0.91217 0.92806 0.86214 1.19837 1.02927 0.93405 1.35770 0.89688 1.26788 0.94319 1.04994 0.92080 1.69914 1.19616 1.33018 1.22498 0.85229 0.78775 0.76005 0.79922 1.18555 1.18130 1.19507 0.93774 0.92062 0.93140 0.76998 0.77258 0.86981 0.74978 0.88532 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.62 9.17 71.23 0.65 -1.97 15 2 C -0.29 -14.18 5.96 -19.26 -0.11 -14.29 15 3 C 0.24 10.72 6.72 38.15 0.26 10.98 15 4 N -0.87 -28.09 8.98 -51.53 -0.46 -28.55 15 5 C -0.33 -15.31 9.83 22.69 0.22 -15.08 15 6 C 0.13 6.69 6.69 22.44 0.15 6.84 15 7 O -0.52 -23.01 13.49 -92.41 -1.25 -24.25 15 8 C -0.26 -14.27 8.61 22.85 0.20 -14.08 15 9 C 0.13 6.97 5.55 -21.32 -0.12 6.85 15 10 C -0.49 -26.46 8.44 23.46 0.20 -26.26 15 11 H 0.09 4.35 6.27 -2.91 -0.02 4.34 15 12 C 0.03 1.69 5.15 85.25 0.44 2.13 15 13 N -0.82 -44.12 10.99 21.82 0.24 -43.88 15 14 Si 0.98 38.69 29.59 68.60 2.03 40.72 15 15 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 17 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 18 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 19 H 0.06 2.00 6.53 -2.39 -0.02 1.98 15 20 H 0.05 2.06 6.26 -2.38 -0.01 2.04 15 21 H 0.40 11.18 6.80 -92.71 -0.63 10.55 15 22 H 0.40 10.66 8.84 -92.71 -0.82 9.84 15 23 H 0.11 4.57 8.06 -2.91 -0.02 4.55 15 24 H 0.39 13.50 9.06 -74.06 -0.67 12.83 15 25 H 0.10 5.73 6.24 -2.91 -0.02 5.72 15 26 H 0.29 13.84 8.30 -92.71 -0.77 13.07 15 Total: -1.00 -63.78 225.00 1.56 -62.22 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -0.88 Total: 38.65 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 1.88 Total: -44.90 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -0.22 Total: -72.43 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.25 Total: -24.25 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -63.78 1.56 -62.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719236.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.173 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds