Wall clock time and date at job start Mon Mar 30 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36262 * 119.78724 * 2 1 4 4 C 1.40819 * 120.01003 * 179.97438 * 3 2 1 5 5 C 1.40969 * 120.19820 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99656 * 154.44899 * 5 4 3 7 7 C 1.39842 * 120.00383 * 334.44321 * 5 4 3 8 8 N 1.30951 * 119.99591 * 342.65315 * 7 5 4 9 9 Si 1.86795 * 119.99934 * 162.65242 * 7 5 4 10 10 H 1.48495 * 109.47192 * 60.00406 * 9 7 5 11 11 H 1.48505 * 109.46948 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47150 * 299.99735 * 9 7 5 13 13 C 1.41502 * 119.59773 * 359.97438 * 4 3 2 14 14 O 1.35676 * 120.21072 * 180.02562 * 13 4 3 15 15 C 1.37996 * 119.57892 * 0.02562 * 13 4 3 16 16 C 1.39259 * 119.98068 * 0.02562 * 15 13 4 17 17 N 1.38914 * 119.79864 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47519 * 89.99773 * 1 2 3 19 19 H 1.09000 * 109.47173 * 210.00206 * 1 2 3 20 20 H 1.09005 * 109.47216 * 330.00056 * 1 2 3 21 21 H 1.08000 * 119.99529 * 359.69751 * 3 2 1 22 22 H 0.97007 * 119.99953 * 180.02562 * 8 7 5 23 23 H 0.96694 * 114.00108 * 265.01541 * 14 13 4 24 24 H 1.08000 * 120.01229 * 180.02562 * 15 13 4 25 25 H 0.97001 * 120.00391 * 179.97438 * 17 16 15 26 26 H 0.96998 * 120.00413 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1839 1.1826 0.0000 4 6 3.5921 1.1881 0.0005 5 6 4.2964 2.4092 0.0000 6 1 5.2970 2.4556 0.4038 7 6 3.6996 3.5605 -0.5234 8 7 2.6553 3.4581 -1.3070 9 14 4.3920 5.2441 -0.1050 10 1 5.8007 5.3288 -0.5668 11 1 3.5862 6.2926 -0.7808 12 1 4.3396 5.4495 1.3648 13 6 4.2957 -0.0396 0.0016 14 8 5.6525 -0.0488 0.0027 15 6 3.5933 -1.2274 0.0016 16 6 2.2008 -1.2123 0.0000 17 7 1.4974 -2.4102 0.0005 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8900 0.5138 21 1 1.6404 2.1158 -0.0049 22 1 2.2415 4.2567 -1.6704 23 1 6.0459 -0.1287 -0.8770 24 1 4.1232 -2.1684 0.0029 25 1 0.5274 -2.4032 -0.0002 26 1 1.9762 -3.2538 0.0017 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719500.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:29 Heat of formation + Delta-G solvation = -32.479189 kcal Electronic energy + Delta-G solvation = -11791.572324 eV Core-core repulsion = 9641.604388 eV Total energy + Delta-G solvation = -2149.967936 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.35304 -35.89889 -34.15876 -32.05252 -30.59569 -28.37496 -25.48074 -24.06737 -21.09593 -19.80398 -17.25214 -16.69513 -16.07162 -14.88708 -14.68907 -13.68126 -13.39000 -13.05316 -12.74185 -12.44840 -11.72692 -11.51356 -11.23176 -11.04678 -10.90341 -10.51143 -10.29895 -9.60071 -9.34882 -9.00788 -8.64762 -7.19827 -6.68157 -6.42395 -4.03381 2.79613 2.97080 3.14303 3.18745 3.34182 4.05340 4.67482 4.94664 5.52148 5.90853 5.97727 6.19125 6.30912 6.43062 6.64197 6.97573 7.19727 7.29105 7.47969 7.56718 7.75290 8.06115 8.25790 8.51815 8.66259 8.79038 8.92800 9.01202 9.30649 10.34491 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.043618 B = 0.013185 C = 0.010446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.780877 B = 2123.133342 C = 2679.688834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.147 4.147 3 C -0.108 4.108 4 C 0.062 3.938 5 C -0.455 4.455 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.808 5.808 9 Si 0.907 3.093 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.266 1.266 13 C 0.010 3.990 14 O -0.496 6.496 15 C -0.189 4.189 16 C 0.112 3.888 17 N -0.895 5.895 18 H 0.051 0.949 19 H 0.044 0.956 20 H 0.054 0.946 21 H 0.124 0.876 22 H 0.277 0.723 23 H 0.356 0.644 24 H 0.093 0.907 25 H 0.383 0.617 26 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -3.672 0.146 4.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.150 4.150 3 C -0.127 4.127 4 C 0.058 3.942 5 C -0.485 4.485 6 H 0.097 0.903 7 C -0.143 4.143 8 N -0.435 5.435 9 Si 0.732 3.268 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.190 1.190 13 C -0.036 4.036 14 O -0.303 6.303 15 C -0.212 4.212 16 C 0.013 3.987 17 N -0.439 5.439 18 H 0.069 0.931 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.141 0.859 22 H 0.088 0.912 23 H 0.209 0.791 24 H 0.111 0.889 25 H 0.211 0.789 26 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.504 -3.361 0.624 4.237 hybrid contribution 0.206 0.392 -0.490 0.660 sum -2.297 -2.969 0.134 3.757 Atomic orbital electron populations 1.20473 0.93767 1.00396 1.00358 1.18909 0.93987 0.92426 1.09726 1.20740 0.93911 0.95908 1.02185 1.17711 0.91791 0.91829 0.92865 1.19276 1.01921 0.92157 1.35188 0.90309 1.25853 0.94410 1.01144 0.92853 1.69863 1.19311 1.31229 1.23137 0.86399 0.79673 0.80976 0.79775 1.19205 1.20607 1.19035 1.18214 0.81611 0.91701 1.12036 1.84721 1.17764 1.96162 1.31663 1.20247 0.92025 0.96618 1.12294 1.16929 0.90161 0.85464 1.06179 1.41928 1.07476 1.04815 1.89714 0.93065 0.93740 0.92728 0.85874 0.91207 0.79147 0.88915 0.78934 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 9.54 36.00 0.34 -1.39 15 2 C -0.15 -3.41 5.86 -104.80 -0.61 -4.02 15 3 C -0.11 -2.82 8.24 -39.32 -0.32 -3.14 15 4 C 0.06 1.70 5.58 -106.64 -0.59 1.10 15 5 C -0.45 -12.58 8.69 -37.95 -0.33 -12.91 15 6 H 0.08 2.18 7.66 -52.49 -0.40 1.78 15 7 C 0.07 1.88 5.13 -17.33 -0.09 1.79 15 8 N -0.81 -21.29 10.98 55.54 0.61 -20.68 15 9 Si 0.91 19.45 29.59 -169.99 -5.03 14.42 15 10 H -0.27 -5.68 7.11 56.52 0.40 -5.27 15 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 13 C 0.01 0.27 6.73 -38.43 -0.26 0.01 15 14 O -0.50 -11.80 12.79 -18.73 -0.24 -12.04 15 15 C -0.19 -4.42 9.80 -39.29 -0.39 -4.80 15 16 C 0.11 2.49 6.74 -83.73 -0.56 1.92 15 17 N -0.90 -15.49 8.95 32.48 0.29 -15.20 15 18 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.04 0.71 6.52 -51.93 -0.34 0.38 15 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 15 21 H 0.12 3.32 6.19 -52.49 -0.32 3.00 15 22 H 0.28 6.70 8.30 -40.82 -0.34 6.36 15 23 H 0.36 6.91 9.06 45.56 0.41 7.33 15 24 H 0.09 1.96 8.06 -52.49 -0.42 1.54 15 25 H 0.38 5.85 6.77 -40.82 -0.28 5.57 15 26 H 0.38 5.73 8.83 -40.82 -0.36 5.37 15 LS Contribution 227.57 15.07 3.43 3.43 Total: -1.00 -29.70 227.57 -5.44 -35.15 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -1.69 Total: 16.38 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.82 Total: -21.45 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.90 Total: -35.89 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.24 Total: -12.04 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.70 -5.44 -35.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719500.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.667 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds