Wall clock time and date at job start Mon Mar 30 2020 01:53:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38792 * 119.74326 * 2 1
4 4 C 1.36454 * 120.60117 * 180.02562 * 3 2 1
5 5 C 1.40831 * 120.05428 * 0.24975 * 4 3 2
6 6 C 1.41186 * 120.25663 * 179.75206 * 5 4 3
7 7 H 1.08001 * 120.00486 * 150.06465 * 6 5 4
8 8 C 1.39923 * 119.99535 * 330.05737 * 6 5 4
9 9 N 1.30873 * 119.99988 * 161.81929 * 8 6 5
10 10 Si 1.86805 * 120.00108 * 341.81978 * 8 6 5
11 11 H 1.48497 * 109.46969 * 95.40732 * 10 8 6
12 12 H 1.48500 * 109.46836 * 215.41067 * 10 8 6
13 13 H 1.48504 * 109.46794 * 335.40667 * 10 8 6
14 14 C 1.41118 * 119.48913 * 359.51941 * 5 4 3
15 15 O 1.35753 * 120.29255 * 180.20908 * 14 5 4
16 16 C 1.38811 * 119.73709 * 180.02562 * 2 1 3
17 17 N 1.40015 * 120.03784 * 0.02562 * 16 2 1
18 18 H 1.08994 * 109.47343 * 89.99981 * 1 2 3
19 19 H 1.08998 * 109.47409 * 210.00457 * 1 2 3
20 20 H 1.09003 * 109.46777 * 330.00341 * 1 2 3
21 21 H 1.08007 * 119.69835 * 0.02562 * 3 2 1
22 22 H 1.07994 * 119.97091 * 179.97438 * 4 3 2
23 23 H 0.96998 * 120.00054 * 179.97438 * 9 8 6
24 24 H 0.96703 * 113.99690 * 270.26816 * 15 14 5
25 25 H 0.96995 * 120.00572 * 0.02562 * 17 16 2
26 26 H 0.97004 * 119.99737 * 179.97438 * 17 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1956 1.2051 0.0000
4 6 3.5600 1.2255 -0.0005
5 6 4.2835 0.0172 -0.0064
6 6 5.6952 0.0334 -0.0122
7 1 6.2465 -0.7719 0.4503
8 6 6.3802 1.0929 -0.6175
9 7 7.6387 1.3077 -0.3299
10 14 5.4982 2.2006 -1.8359
11 1 4.9930 3.4069 -1.1323
12 1 6.4429 2.6107 -2.9057
13 1 4.3575 1.4647 -2.4381
14 6 3.5865 -1.2098 -0.0014
15 8 4.2675 -2.3842 -0.0026
16 6 2.1956 -1.2053 -0.0005
17 7 1.4907 -2.4151 -0.0016
18 1 -0.3634 0.0000 -1.0276
19 1 -0.3634 -0.8899 0.5139
20 1 -0.3633 0.8901 0.5138
21 1 1.6465 2.1351 0.0004
22 1 4.0854 2.1690 -0.0009
23 1 8.1136 2.0419 -0.7498
24 1 4.4644 -2.7236 -0.8864
25 1 0.5208 -2.4114 -0.0024
26 1 1.9725 -3.2571 -0.0024
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000575719515.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:53:30
Heat of formation + Delta-G solvation = -34.727287 kcal
Electronic energy + Delta-G solvation = -11896.333467 eV
Core-core repulsion = 9746.268046 eV
Total energy + Delta-G solvation = -2150.065421 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 193.084 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-38.63966 -35.46795 -34.48703 -32.81687 -30.76908 -27.80047 -27.11451 -23.45005
-21.03961 -20.28231 -17.46923 -16.91571 -16.11409 -15.36034 -14.63574 -13.98948
-13.67949 -13.23444 -12.78788 -12.69457 -11.92138 -11.70850 -11.42021 -11.14122
-10.80020 -10.55684 -10.28798 -9.67126 -9.55753 -9.25466 -8.86208 -7.36507
-6.93751 -6.45975 -4.43634 2.55875 2.86065 3.14111 3.23467 3.34921
4.00934 4.48567 4.72459 5.29879 5.64709 5.88007 6.00874 6.25488
6.32948 6.45487 6.63613 6.77879 7.08206 7.24819 7.45531 7.69588
7.81186 7.92709 8.35359 8.39542 8.51742 8.64423 8.83646 9.15252
10.08125
Molecular weight = 193.08amu
Principal moments of inertia in cm(-1)
A = 0.044091 B = 0.014936 C = 0.011935
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 634.904203 B = 1874.173135 C = 2345.440410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C -0.278 4.278
3 C -0.043 4.043
4 C -0.261 4.261
5 C 0.104 3.896
6 C -0.433 4.433
7 H 0.095 0.905
8 C 0.083 3.917
9 N -0.805 5.805
10 Si 0.915 3.085
11 H -0.270 1.270
12 H -0.293 1.293
13 H -0.245 1.245
14 C -0.084 4.084
15 O -0.485 6.485
16 C 0.230 3.770
17 N -0.886 5.886
18 H 0.041 0.959
19 H 0.041 0.959
20 H 0.048 0.952
21 H 0.094 0.906
22 H 0.100 0.900
23 H 0.285 0.715
24 H 0.347 0.653
25 H 0.385 0.615
26 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.332 -1.592 -2.651 8.887
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.283 4.283
3 C -0.062 4.062
4 C -0.281 4.281
5 C 0.100 3.900
6 C -0.461 4.461
7 H 0.113 0.887
8 C -0.136 4.136
9 N -0.429 5.429
10 Si 0.742 3.258
11 H -0.196 1.196
12 H -0.220 1.220
13 H -0.168 1.168
14 C -0.134 4.134
15 O -0.290 6.290
16 C 0.127 3.873
17 N -0.428 5.428
18 H 0.059 0.941
19 H 0.060 0.940
20 H 0.067 0.933
21 H 0.112 0.888
22 H 0.118 0.882
23 H 0.095 0.905
24 H 0.198 0.802
25 H 0.213 0.787
26 H 0.218 0.782
Dipole moment (debyes) X Y Z Total
from point charges -8.047 -1.361 -2.022 8.408
hybrid contribution -0.278 0.230 -1.013 1.076
sum -8.325 -1.131 -3.036 8.933
Atomic orbital electron populations
1.20230 0.93392 1.00178 0.99552 1.18514 0.93827 0.91482 1.24519
1.20028 0.93917 0.95350 0.96945 1.20553 0.93659 0.96952 1.16916
1.17757 0.93619 0.90149 0.88472 1.19422 0.90101 1.05978 1.30612
0.88690 1.26242 0.94819 0.96219 0.96340 1.69727 1.10834 1.26993
1.35337 0.86264 0.79731 0.80177 0.79649 1.19609 1.22040 1.16767
1.17764 0.86603 0.85529 1.23492 1.84848 1.76663 1.36716 1.30811
1.17676 0.90285 0.85515 0.93845 1.42400 1.07752 1.05608 1.87039
0.94063 0.93967 0.93333 0.88807 0.88217 0.90454 0.80213 0.78665
0.78174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.26 9.55 36.01 0.34 -0.92 15
2 C -0.28 -5.87 5.91 -104.20 -0.62 -6.49 15
3 C -0.04 -0.97 9.61 -40.02 -0.38 -1.35 15
4 C -0.26 -6.46 7.12 -39.24 -0.28 -6.74 15
5 C 0.10 2.75 5.11 -106.71 -0.55 2.20 15
6 C -0.43 -12.09 9.19 -37.83 -0.35 -12.44 15
7 H 0.10 2.85 7.90 -52.49 -0.41 2.43 15
8 C 0.08 2.21 5.40 -17.33 -0.09 2.12 15
9 N -0.80 -21.75 13.93 55.55 0.77 -20.97 15
10 Si 0.92 21.07 24.52 -169.99 -4.17 16.90 15
11 H -0.27 -6.04 6.71 56.52 0.38 -5.66 15
12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15
13 H -0.24 -5.76 6.86 56.52 0.39 -5.37 15
14 C -0.08 -2.05 6.76 -38.17 -0.26 -2.31 15
15 O -0.48 -10.98 12.11 -18.97 -0.23 -11.21 15
16 C 0.23 4.99 6.74 -83.59 -0.56 4.43 15
17 N -0.89 -15.19 8.99 32.50 0.29 -14.90 15
18 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15
19 H 0.04 0.62 6.52 -51.93 -0.34 0.28 15
20 H 0.05 0.74 8.08 -51.93 -0.42 0.32 15
21 H 0.09 1.82 8.06 -52.48 -0.42 1.39 15
22 H 0.10 2.45 4.73 -52.49 -0.25 2.20 15
23 H 0.29 6.94 8.30 -40.82 -0.34 6.60 15
24 H 0.35 6.51 9.06 45.56 0.41 6.93 15
25 H 0.39 5.61 6.80 -40.82 -0.28 5.33 15
26 H 0.39 6.21 8.20 -40.82 -0.33 5.87 15
LS Contribution 221.40 15.07 3.34 3.34
Total: -1.00 -29.47 221.40 -4.38 -33.85
By element:
Atomic # 1 Polarization: 16.11 SS G_CDS: -1.64 Total: 14.47 kcal
Atomic # 6 Polarization: -18.74 SS G_CDS: -2.74 Total: -21.48 kcal
Atomic # 7 Polarization: -36.94 SS G_CDS: 1.07 Total: -35.87 kcal
Atomic # 8 Polarization: -10.98 SS G_CDS: -0.23 Total: -11.21 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -4.17 Total: 16.90 kcal
Total LS contribution 3.34 Total: 3.34 kcal
Total: -29.47 -4.38 -33.85 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575719515.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.879 kcal
(2) G-P(sol) polarization free energy of solvation -29.473 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.352 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.375 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.849 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.727 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds