Wall clock time and date at job start Mon Mar 30 2020 01:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38792 * 119.74326 * 2 1 4 4 C 1.36454 * 120.60117 * 180.02562 * 3 2 1 5 5 C 1.40831 * 120.05428 * 0.24975 * 4 3 2 6 6 C 1.41186 * 120.25663 * 179.75206 * 5 4 3 7 7 H 1.08001 * 120.00486 * 150.06465 * 6 5 4 8 8 C 1.39923 * 119.99535 * 330.05737 * 6 5 4 9 9 N 1.30873 * 119.99988 * 161.81929 * 8 6 5 10 10 Si 1.86805 * 120.00108 * 341.81978 * 8 6 5 11 11 H 1.48497 * 109.46969 * 95.40732 * 10 8 6 12 12 H 1.48500 * 109.46836 * 215.41067 * 10 8 6 13 13 H 1.48504 * 109.46794 * 335.40667 * 10 8 6 14 14 C 1.41118 * 119.48913 * 359.51941 * 5 4 3 15 15 O 1.35753 * 120.29255 * 180.20908 * 14 5 4 16 16 C 1.38811 * 119.73709 * 180.02562 * 2 1 3 17 17 N 1.40015 * 120.03784 * 0.02562 * 16 2 1 18 18 H 1.08994 * 109.47343 * 89.99981 * 1 2 3 19 19 H 1.08998 * 109.47409 * 210.00457 * 1 2 3 20 20 H 1.09003 * 109.46777 * 330.00341 * 1 2 3 21 21 H 1.08007 * 119.69835 * 0.02562 * 3 2 1 22 22 H 1.07994 * 119.97091 * 179.97438 * 4 3 2 23 23 H 0.96998 * 120.00054 * 179.97438 * 9 8 6 24 24 H 0.96703 * 113.99690 * 270.26816 * 15 14 5 25 25 H 0.96995 * 120.00572 * 0.02562 * 17 16 2 26 26 H 0.97004 * 119.99737 * 179.97438 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2051 0.0000 4 6 3.5600 1.2255 -0.0005 5 6 4.2835 0.0172 -0.0064 6 6 5.6952 0.0334 -0.0122 7 1 6.2465 -0.7719 0.4503 8 6 6.3802 1.0929 -0.6175 9 7 7.6387 1.3077 -0.3299 10 14 5.4982 2.2006 -1.8359 11 1 4.9930 3.4069 -1.1323 12 1 6.4429 2.6107 -2.9057 13 1 4.3575 1.4647 -2.4381 14 6 3.5865 -1.2098 -0.0014 15 8 4.2675 -2.3842 -0.0026 16 6 2.1956 -1.2053 -0.0005 17 7 1.4907 -2.4151 -0.0016 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3633 0.8901 0.5138 21 1 1.6465 2.1351 0.0004 22 1 4.0854 2.1690 -0.0009 23 1 8.1136 2.0419 -0.7498 24 1 4.4644 -2.7236 -0.8864 25 1 0.5208 -2.4114 -0.0024 26 1 1.9725 -3.2571 -0.0024 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719515.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:30 Heat of formation + Delta-G solvation = -34.727287 kcal Electronic energy + Delta-G solvation = -11896.333467 eV Core-core repulsion = 9746.268046 eV Total energy + Delta-G solvation = -2150.065421 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.63966 -35.46795 -34.48703 -32.81687 -30.76908 -27.80047 -27.11451 -23.45005 -21.03961 -20.28231 -17.46923 -16.91571 -16.11409 -15.36034 -14.63574 -13.98948 -13.67949 -13.23444 -12.78788 -12.69457 -11.92138 -11.70850 -11.42021 -11.14122 -10.80020 -10.55684 -10.28798 -9.67126 -9.55753 -9.25466 -8.86208 -7.36507 -6.93751 -6.45975 -4.43634 2.55875 2.86065 3.14111 3.23467 3.34921 4.00934 4.48567 4.72459 5.29879 5.64709 5.88007 6.00874 6.25488 6.32948 6.45487 6.63613 6.77879 7.08206 7.24819 7.45531 7.69588 7.81186 7.92709 8.35359 8.39542 8.51742 8.64423 8.83646 9.15252 10.08125 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.044091 B = 0.014936 C = 0.011935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.904203 B = 1874.173135 C = 2345.440410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.278 4.278 3 C -0.043 4.043 4 C -0.261 4.261 5 C 0.104 3.896 6 C -0.433 4.433 7 H 0.095 0.905 8 C 0.083 3.917 9 N -0.805 5.805 10 Si 0.915 3.085 11 H -0.270 1.270 12 H -0.293 1.293 13 H -0.245 1.245 14 C -0.084 4.084 15 O -0.485 6.485 16 C 0.230 3.770 17 N -0.886 5.886 18 H 0.041 0.959 19 H 0.041 0.959 20 H 0.048 0.952 21 H 0.094 0.906 22 H 0.100 0.900 23 H 0.285 0.715 24 H 0.347 0.653 25 H 0.385 0.615 26 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 -1.592 -2.651 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.283 4.283 3 C -0.062 4.062 4 C -0.281 4.281 5 C 0.100 3.900 6 C -0.461 4.461 7 H 0.113 0.887 8 C -0.136 4.136 9 N -0.429 5.429 10 Si 0.742 3.258 11 H -0.196 1.196 12 H -0.220 1.220 13 H -0.168 1.168 14 C -0.134 4.134 15 O -0.290 6.290 16 C 0.127 3.873 17 N -0.428 5.428 18 H 0.059 0.941 19 H 0.060 0.940 20 H 0.067 0.933 21 H 0.112 0.888 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.198 0.802 25 H 0.213 0.787 26 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.047 -1.361 -2.022 8.408 hybrid contribution -0.278 0.230 -1.013 1.076 sum -8.325 -1.131 -3.036 8.933 Atomic orbital electron populations 1.20230 0.93392 1.00178 0.99552 1.18514 0.93827 0.91482 1.24519 1.20028 0.93917 0.95350 0.96945 1.20553 0.93659 0.96952 1.16916 1.17757 0.93619 0.90149 0.88472 1.19422 0.90101 1.05978 1.30612 0.88690 1.26242 0.94819 0.96219 0.96340 1.69727 1.10834 1.26993 1.35337 0.86264 0.79731 0.80177 0.79649 1.19609 1.22040 1.16767 1.17764 0.86603 0.85529 1.23492 1.84848 1.76663 1.36716 1.30811 1.17676 0.90285 0.85515 0.93845 1.42400 1.07752 1.05608 1.87039 0.94063 0.93967 0.93333 0.88807 0.88217 0.90454 0.80213 0.78665 0.78174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 9.55 36.01 0.34 -0.92 15 2 C -0.28 -5.87 5.91 -104.20 -0.62 -6.49 15 3 C -0.04 -0.97 9.61 -40.02 -0.38 -1.35 15 4 C -0.26 -6.46 7.12 -39.24 -0.28 -6.74 15 5 C 0.10 2.75 5.11 -106.71 -0.55 2.20 15 6 C -0.43 -12.09 9.19 -37.83 -0.35 -12.44 15 7 H 0.10 2.85 7.90 -52.49 -0.41 2.43 15 8 C 0.08 2.21 5.40 -17.33 -0.09 2.12 15 9 N -0.80 -21.75 13.93 55.55 0.77 -20.97 15 10 Si 0.92 21.07 24.52 -169.99 -4.17 16.90 15 11 H -0.27 -6.04 6.71 56.52 0.38 -5.66 15 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 13 H -0.24 -5.76 6.86 56.52 0.39 -5.37 15 14 C -0.08 -2.05 6.76 -38.17 -0.26 -2.31 15 15 O -0.48 -10.98 12.11 -18.97 -0.23 -11.21 15 16 C 0.23 4.99 6.74 -83.59 -0.56 4.43 15 17 N -0.89 -15.19 8.99 32.50 0.29 -14.90 15 18 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.04 0.62 6.52 -51.93 -0.34 0.28 15 20 H 0.05 0.74 8.08 -51.93 -0.42 0.32 15 21 H 0.09 1.82 8.06 -52.48 -0.42 1.39 15 22 H 0.10 2.45 4.73 -52.49 -0.25 2.20 15 23 H 0.29 6.94 8.30 -40.82 -0.34 6.60 15 24 H 0.35 6.51 9.06 45.56 0.41 6.93 15 25 H 0.39 5.61 6.80 -40.82 -0.28 5.33 15 26 H 0.39 6.21 8.20 -40.82 -0.33 5.87 15 LS Contribution 221.40 15.07 3.34 3.34 Total: -1.00 -29.47 221.40 -4.38 -33.85 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -1.64 Total: 14.47 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.74 Total: -21.48 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 1.07 Total: -35.87 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.23 Total: -11.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.17 Total: 16.90 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.47 -4.38 -33.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719515.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.879 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds