Wall clock time and date at job start Mon Mar 30 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37983 * 120.19086 * 2 1 4 4 N 1.39865 * 120.03376 * 359.95111 * 3 2 1 5 5 C 1.39996 * 119.92603 * 179.97438 * 3 2 1 6 6 O 1.35744 * 119.84751 * 180.02562 * 5 3 2 7 7 C 1.39105 * 120.30426 * 0.02562 * 5 3 2 8 8 C 1.36480 * 120.37519 * 359.97438 * 7 5 3 9 9 C 1.40773 * 120.18479 * 180.22534 * 2 1 3 10 10 C 1.41197 * 120.14964 * 0.02889 * 9 2 1 11 11 H 1.08002 * 120.00160 * 25.83950 * 10 9 2 12 12 C 1.39864 * 119.99737 * 205.84250 * 10 9 2 13 13 N 1.30885 * 120.00027 * 15.48680 * 12 10 9 14 14 Si 1.86802 * 119.99731 * 195.48867 * 12 10 9 15 15 H 1.48499 * 109.47171 * 59.99642 * 14 12 10 16 16 H 1.48504 * 109.46902 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47155 * 299.99925 * 14 12 10 18 18 H 1.09001 * 109.46953 * 90.00272 * 1 2 3 19 19 H 1.08997 * 109.47523 * 210.00082 * 1 2 3 20 20 H 1.09004 * 109.47138 * 330.00434 * 1 2 3 21 21 H 0.97004 * 119.99840 * 180.02562 * 4 3 2 22 22 H 0.97003 * 120.00306 * 0.02562 * 4 3 2 23 23 H 0.96706 * 114.00156 * 269.97870 * 6 5 3 24 24 H 1.07995 * 119.81234 * 179.97438 * 7 5 3 25 25 H 1.08000 * 119.96668 * 179.97438 * 8 7 5 26 26 H 0.97008 * 119.99944 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1927 0.0000 4 7 1.5063 2.4067 -0.0010 5 6 3.6008 1.1862 0.0005 6 8 4.2818 2.3604 0.0011 7 6 4.2972 -0.0180 0.0005 8 6 3.6233 -1.2049 0.0005 9 6 2.2148 -1.2168 -0.0048 10 6 1.5159 -2.4437 -0.0102 11 1 0.5174 -2.4946 -0.4185 12 6 2.1169 -3.5931 0.5132 13 7 3.1785 -3.4890 1.2716 14 14 1.4043 -5.2768 0.1298 15 1 1.4223 -5.4993 -1.3383 16 1 2.2181 -6.3229 0.7997 17 1 0.0056 -5.3465 0.6239 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3634 0.8901 0.5138 21 1 1.9946 3.2448 -0.0014 22 1 0.5363 2.4105 -0.0014 23 1 4.4798 2.7007 -0.8822 24 1 5.3771 -0.0137 0.0005 25 1 4.1706 -2.1359 0.0001 26 1 3.5955 -4.2862 1.6344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719537.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:32 Heat of formation + Delta-G solvation = -56.621186 kcal Electronic energy + Delta-G solvation = -11820.337651 eV Core-core repulsion = 9669.322839 eV Total energy + Delta-G solvation = -2151.014812 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.24400 -37.55284 -35.86629 -34.31266 -32.35660 -29.56217 -27.51473 -26.25690 -22.55382 -21.62569 -19.22722 -18.66338 -17.64093 -17.04967 -16.30216 -15.76949 -15.07808 -14.80938 -14.23892 -13.94891 -13.41853 -13.30568 -12.96108 -12.77334 -12.39775 -12.23486 -11.94878 -11.51689 -11.24071 -10.90609 -10.69069 -9.07800 -8.59557 -7.98030 -6.27933 0.92758 1.30889 1.41564 1.52726 1.57368 2.23341 2.74601 3.33423 3.69073 3.94088 4.45400 4.67961 4.94700 5.05746 5.11824 5.18861 5.30223 5.42842 5.72043 5.87258 6.04296 6.10992 6.29726 6.64099 6.81523 6.95825 7.03196 7.31928 7.41854 8.36976 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.052910 B = 0.012132 C = 0.010147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.076037 B = 2307.476156 C = 2758.892165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.282 4.282 3 C 0.216 3.784 4 N -0.870 5.870 5 C -0.112 4.112 6 O -0.498 6.498 7 C -0.099 4.099 8 C -0.216 4.216 9 C 0.111 3.889 10 C -0.483 4.483 11 H 0.084 0.916 12 C 0.032 3.968 13 N -0.824 5.824 14 Si 0.983 3.017 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.258 1.258 18 H 0.050 0.950 19 H 0.049 0.951 20 H 0.057 0.943 21 H 0.398 0.602 22 H 0.398 0.602 23 H 0.368 0.632 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 3.496 -3.231 5.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.289 4.289 3 C 0.112 3.888 4 N -0.413 5.413 5 C -0.160 4.160 6 O -0.306 6.306 7 C -0.118 4.118 8 C -0.237 4.237 9 C 0.108 3.892 10 C -0.512 4.512 11 H 0.102 0.898 12 C -0.183 4.183 13 N -0.450 5.450 14 Si 0.804 3.196 15 H -0.184 1.184 16 H -0.195 1.195 17 H -0.182 1.182 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.227 0.773 22 H 0.228 0.772 23 H 0.221 0.779 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.950 3.258 -2.453 5.033 hybrid contribution 0.055 -0.409 -0.472 0.627 sum -2.895 2.849 -2.925 5.005 Atomic orbital electron populations 1.20151 0.91197 1.00822 1.00184 1.19493 0.96048 0.91101 1.22233 1.17675 0.90244 0.86796 0.94095 1.42187 1.08462 1.04352 1.86332 1.17594 0.88019 0.84970 1.25458 1.84809 1.76282 1.36652 1.32847 1.20675 0.98338 0.92479 1.00310 1.20813 0.94919 0.96258 1.11690 1.17681 0.91981 0.92610 0.86937 1.19776 1.02299 0.93222 1.35882 0.89835 1.26837 0.94420 1.05110 0.91892 1.69944 1.18973 1.33029 1.23022 0.85239 0.79226 0.75523 0.79637 1.18409 1.19533 1.18177 0.93153 0.93192 0.92423 0.77319 0.77151 0.77922 0.87885 0.88022 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.68 8.95 71.24 0.64 -2.04 15 2 C -0.28 -13.71 5.95 -19.31 -0.11 -13.83 15 3 C 0.22 9.70 6.75 38.22 0.26 9.96 15 4 N -0.87 -29.71 8.98 -51.14 -0.46 -30.17 15 5 C -0.11 -5.19 6.75 22.90 0.15 -5.04 15 6 O -0.50 -19.57 12.72 -90.68 -1.15 -20.72 15 7 C -0.10 -4.93 9.90 22.07 0.22 -4.72 15 8 C -0.22 -11.84 8.62 22.50 0.19 -11.65 15 9 C 0.11 6.06 5.57 -21.29 -0.12 5.94 15 10 C -0.48 -25.66 8.12 23.39 0.19 -25.47 15 11 H 0.08 4.20 6.87 -2.91 -0.02 4.18 15 12 C 0.03 1.63 5.18 85.23 0.44 2.07 15 13 N -0.82 -43.71 10.88 21.81 0.24 -43.47 15 14 Si 0.98 37.92 29.59 68.60 2.03 39.95 15 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 16 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 17 H -0.26 -9.53 7.11 99.48 0.71 -8.83 15 18 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 19 H 0.05 2.09 6.79 -2.39 -0.02 2.08 15 20 H 0.06 1.96 6.54 -2.38 -0.02 1.94 15 21 H 0.40 11.94 8.19 -92.71 -0.76 11.18 15 22 H 0.40 11.79 6.82 -92.71 -0.63 11.16 15 23 H 0.37 10.89 9.06 -74.05 -0.67 10.22 15 24 H 0.10 4.73 8.06 -2.91 -0.02 4.71 15 25 H 0.10 5.80 6.13 -2.91 -0.02 5.78 15 26 H 0.29 13.81 8.30 -92.70 -0.77 13.04 15 Total: -1.00 -61.90 224.18 1.69 -60.21 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -0.82 Total: 38.96 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 1.86 Total: -44.76 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -0.22 Total: -73.64 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.15 Total: -20.72 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -61.90 1.69 -60.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719537.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.593 kcal (2) G-P(sol) polarization free energy of solvation -61.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds