Wall clock time and date at job start Mon Mar 30 2020 01:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38134 * 119.72008 * 2 1 4 4 C 1.38672 * 120.20410 * 180.02562 * 3 2 1 5 5 N 1.38867 * 120.18053 * 179.72668 * 4 3 2 6 6 C 1.41568 * 119.63898 * 359.97438 * 4 3 2 7 7 C 1.41026 * 120.27884 * 179.97438 * 6 4 3 8 8 H 1.08003 * 120.00424 * 333.63780 * 7 6 4 9 9 C 1.39905 * 119.99862 * 153.63708 * 7 6 4 10 10 N 1.30882 * 120.00348 * 344.00657 * 9 7 6 11 11 Si 1.86805 * 119.99899 * 164.01386 * 9 7 6 12 12 H 1.48493 * 109.47594 * 94.96017 * 11 9 7 13 13 H 1.48500 * 109.46903 * 214.96044 * 11 9 7 14 14 H 1.48499 * 109.46875 * 334.95709 * 11 9 7 15 15 C 1.40668 * 119.44590 * 0.02562 * 6 4 3 16 16 C 1.37881 * 119.78707 * 0.02562 * 15 6 4 17 17 O 1.35958 * 119.82355 * 179.97438 * 16 15 6 18 18 H 1.09000 * 109.47275 * 89.99788 * 1 2 3 19 19 H 1.08998 * 109.47513 * 210.00484 * 1 2 3 20 20 H 1.09009 * 109.47089 * 330.00034 * 1 2 3 21 21 H 1.08009 * 119.89622 * 0.02562 * 3 2 1 22 22 H 0.96993 * 119.99831 * 359.97438 * 5 4 3 23 23 H 0.97000 * 119.99819 * 179.97438 * 5 4 3 24 24 H 0.97000 * 120.00257 * 180.02562 * 10 9 7 25 25 H 1.08004 * 120.10697 * 180.02562 * 15 6 4 26 26 H 0.96700 * 114.00055 * 269.97708 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1918 1.1996 0.0000 4 6 3.5785 1.2114 -0.0005 5 7 4.2664 2.4176 -0.0063 6 6 4.2889 -0.0131 -0.0005 7 6 5.6992 -0.0170 -0.0016 8 1 6.2412 0.8194 -0.4177 9 6 6.3962 -1.1043 0.5364 10 7 5.7781 -1.9595 1.3106 11 14 8.2091 -1.3352 0.1498 12 1 9.0270 -0.7294 1.2310 13 1 8.5135 -2.7854 0.0523 14 1 8.5279 -0.6747 -1.1414 15 6 3.5765 -1.2260 -0.0005 16 6 2.1977 -1.2105 -0.0011 17 8 1.5084 -2.3824 -0.0016 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3634 0.8901 0.5139 21 1 1.6455 2.1314 0.0004 22 1 3.7770 3.2550 -0.0103 23 1 5.2364 2.4227 -0.0062 24 1 6.2614 -2.7131 1.6839 25 1 4.1077 -2.1664 -0.0001 26 1 1.3090 -2.7210 -0.8851 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719575.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:24 Heat of formation + Delta-G solvation = -35.860118 kcal Electronic energy + Delta-G solvation = -11785.358044 eV Core-core repulsion = 9635.243499 eV Total energy + Delta-G solvation = -2150.114545 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.34692 -35.99781 -33.68654 -32.64905 -30.48319 -27.36585 -26.66526 -23.61789 -21.02543 -19.85319 -17.68677 -16.24342 -15.87422 -15.26113 -14.54115 -13.98454 -13.45426 -12.80623 -12.49363 -12.32017 -11.72114 -11.59492 -11.20284 -11.05901 -10.90678 -10.67960 -10.18528 -10.01434 -9.15992 -8.97459 -8.77845 -7.29141 -6.69351 -6.20034 -4.13336 2.77611 3.07551 3.10941 3.13500 3.19706 3.98647 4.63683 5.21764 5.43692 5.75434 6.15465 6.23055 6.41044 6.44861 6.68381 7.03893 7.17031 7.26555 7.47883 7.63031 7.79268 8.04792 8.17098 8.37279 8.74361 8.83914 8.92212 9.10300 9.19388 10.31488 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.044332 B = 0.013066 C = 0.010407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.452934 B = 2142.431349 C = 2689.793335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.187 4.187 3 C -0.169 4.169 4 C 0.117 3.883 5 N -0.884 5.884 6 C 0.071 3.929 7 C -0.465 4.465 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.798 5.798 11 Si 0.905 3.095 12 H -0.273 1.273 13 H -0.277 1.277 14 H -0.263 1.263 15 C -0.158 4.158 16 C 0.065 3.935 17 O -0.507 6.507 18 H 0.042 0.958 19 H 0.054 0.946 20 H 0.043 0.957 21 H 0.091 0.909 22 H 0.377 0.623 23 H 0.392 0.608 24 H 0.278 0.722 25 H 0.124 0.876 26 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 2.496 -3.088 4.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.189 4.189 3 C -0.193 4.193 4 C 0.015 3.985 5 N -0.425 5.425 6 C 0.066 3.934 7 C -0.496 4.496 8 H 0.091 0.909 9 C -0.142 4.142 10 N -0.424 5.424 11 Si 0.729 3.271 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.187 1.187 15 C -0.179 4.179 16 C 0.020 3.980 17 O -0.314 6.314 18 H 0.060 0.940 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.109 0.891 22 H 0.202 0.798 23 H 0.220 0.780 24 H 0.089 0.911 25 H 0.142 0.858 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.899 2.269 -2.311 3.754 hybrid contribution 1.015 0.104 -0.531 1.150 sum -0.884 2.372 -2.842 3.806 Atomic orbital electron populations 1.20332 0.93506 1.00679 0.99657 1.19183 0.94062 0.92305 1.13364 1.19710 0.91835 0.95751 1.12021 1.17988 0.90480 0.86654 1.03335 1.41897 1.08367 1.04218 1.88038 1.17078 0.93183 0.88820 0.94330 1.19119 0.91067 1.03674 1.35761 0.90904 1.25795 1.00395 0.95117 0.92928 1.69851 1.38219 1.11798 1.22552 0.86369 0.82610 0.78326 0.79752 1.19830 1.20183 1.18684 1.21261 0.91184 0.98952 1.06538 1.18055 0.89960 0.83229 1.06721 1.84809 1.76697 1.38459 1.31483 0.93967 0.92719 0.93757 0.89131 0.79757 0.77994 0.91100 0.85793 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.77 36.00 0.35 -1.25 15 2 C -0.19 -4.31 5.91 -104.24 -0.62 -4.93 15 3 C -0.17 -3.87 9.50 -39.46 -0.37 -4.25 15 4 C 0.12 2.82 6.79 -83.25 -0.56 2.25 15 5 N -0.88 -17.66 8.98 32.74 0.29 -17.37 15 6 C 0.07 1.89 5.57 -106.65 -0.59 1.29 15 7 C -0.47 -12.19 8.48 -37.90 -0.32 -12.51 15 8 H 0.07 1.79 6.71 -52.48 -0.35 1.44 15 9 C 0.07 1.89 5.16 -17.33 -0.09 1.80 15 10 N -0.80 -21.34 10.97 55.55 0.61 -20.73 15 11 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 15 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 13 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 14 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 15 C -0.16 -4.26 8.59 -38.80 -0.33 -4.59 15 16 C 0.07 1.61 6.66 -39.29 -0.26 1.35 15 17 O -0.51 -11.21 12.51 -19.61 -0.25 -11.46 15 18 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 19 H 0.05 1.02 7.51 -51.93 -0.39 0.63 15 20 H 0.04 0.76 8.08 -51.92 -0.42 0.34 15 21 H 0.09 1.83 8.06 -52.48 -0.42 1.41 15 22 H 0.38 6.30 8.83 -40.82 -0.36 5.93 15 23 H 0.39 7.63 7.06 -40.82 -0.29 7.35 15 24 H 0.28 6.83 8.30 -40.82 -0.34 6.49 15 25 H 0.12 3.49 6.23 -52.48 -0.33 3.17 15 26 H 0.36 6.13 9.06 45.56 0.41 6.54 15 LS Contribution 227.78 15.07 3.43 3.43 Total: -1.00 -29.61 227.78 -5.45 -35.06 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -1.70 Total: 18.07 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.80 Total: -20.84 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.90 Total: -38.09 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.25 Total: -11.46 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.61 -5.45 -35.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719575.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.804 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds