Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36480 * 119.97141 * 2 1 4 4 C 1.38758 * 120.60044 * 179.97438 * 3 2 1 5 5 C 1.38841 * 120.51668 * 0.02562 * 4 3 2 6 6 N 1.40020 * 120.03911 * 179.97438 * 5 4 3 7 7 C 1.39051 * 119.92561 * 359.69928 * 5 4 3 8 8 O 1.35757 * 120.29639 * 180.31677 * 7 5 4 9 9 C 1.40803 * 119.96874 * 179.97438 * 2 1 3 10 10 C 1.41177 * 120.25753 * 359.97438 * 9 2 1 11 11 H 1.07996 * 120.00074 * 38.31301 * 10 9 2 12 12 C 1.39919 * 120.00069 * 218.30895 * 10 9 2 13 13 N 1.30868 * 120.00172 * 24.62676 * 12 10 9 14 14 Si 1.86801 * 120.00038 * 204.35882 * 12 10 9 15 15 H 1.48507 * 109.46943 * 180.27501 * 14 12 10 16 16 H 1.48498 * 109.47011 * 300.27102 * 14 12 10 17 17 H 1.48497 * 109.47525 * 60.27355 * 14 12 10 18 18 H 1.09007 * 109.47059 * 270.02020 * 1 2 3 19 19 H 1.09001 * 109.47250 * 30.01954 * 1 2 3 20 20 H 1.09004 * 109.47286 * 150.01977 * 1 2 3 21 21 H 1.08003 * 119.70317 * 0.02562 * 3 2 1 22 22 H 1.08002 * 119.73858 * 180.02562 * 4 3 2 23 23 H 0.96997 * 119.99694 * 0.02562 * 6 5 4 24 24 H 0.96998 * 120.00149 * 179.97438 * 6 5 4 25 25 H 0.96698 * 114.00735 * 271.93393 * 8 7 5 26 26 H 0.97001 * 119.99509 * 5.29759 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1823 0.0000 4 6 3.5763 1.1975 0.0005 5 6 4.2944 0.0093 0.0005 6 7 5.6943 0.0363 0.0005 7 6 3.6218 -1.2077 0.0063 8 8 4.3164 -2.3741 0.0129 9 6 2.2103 -1.2198 0.0005 10 6 1.5093 -2.4452 0.0016 11 1 0.6039 -2.5499 -0.5778 12 6 1.9874 -3.5241 0.7533 13 7 2.7511 -3.3091 1.7941 14 14 1.5296 -5.2710 0.2757 15 1 2.1536 -6.2242 1.2284 16 1 0.0532 -5.4247 0.3173 17 1 2.0182 -5.5529 -1.0979 18 1 -0.3633 0.0004 1.0277 19 1 -0.3634 0.8898 -0.5141 20 1 -0.3634 -0.8902 -0.5135 21 1 1.6435 2.1145 0.0004 22 1 4.1017 2.1411 0.0009 23 1 6.1630 0.8855 0.0009 24 1 6.1955 -0.7942 0.0009 25 1 4.5440 -2.7014 -0.8681 26 1 2.9230 -2.4016 2.0903 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575719587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -37.226346 kcal Electronic energy + Delta-G solvation = -12087.039806 eV Core-core repulsion = 9936.866018 eV Total energy + Delta-G solvation = -2150.173789 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.47534 -35.21486 -34.40604 -32.65184 -29.60213 -28.49338 -25.18010 -24.16760 -21.04326 -19.79352 -17.72082 -16.60653 -15.78464 -15.20742 -14.11423 -13.82504 -13.63658 -12.85930 -12.69302 -12.29463 -11.66635 -11.34917 -11.14974 -11.01722 -10.50681 -10.39507 -10.28177 -9.67106 -9.15134 -8.97547 -8.48873 -7.25386 -6.99334 -6.26630 -4.27463 2.83624 3.00123 3.26144 3.35789 3.45556 4.19145 4.75120 4.88380 5.39360 5.85555 6.13276 6.38522 6.56684 6.65627 6.76028 6.94908 7.00539 7.29169 7.61846 7.70697 7.85108 7.99157 8.15831 8.29757 8.51712 8.69284 8.80420 9.05462 9.36193 10.34750 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.038100 B = 0.016595 C = 0.012321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.738923 B = 1686.885822 C = 2272.080769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.217 4.217 3 C -0.057 4.057 4 C -0.305 4.305 5 C 0.214 3.786 6 N -0.888 5.888 7 C -0.080 4.080 8 O -0.469 6.469 9 C 0.114 3.886 10 C -0.530 4.530 11 H 0.074 0.926 12 C 0.048 3.952 13 N -0.768 5.768 14 Si 1.064 2.936 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.279 1.279 18 H 0.042 0.958 19 H 0.034 0.966 20 H 0.056 0.944 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.383 0.617 24 H 0.391 0.609 25 H 0.338 0.662 26 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 1.772 -3.255 3.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.219 4.219 3 C -0.076 4.076 4 C -0.329 4.329 5 C 0.112 3.888 6 N -0.429 5.429 7 C -0.130 4.130 8 O -0.273 6.273 9 C 0.110 3.890 10 C -0.558 4.558 11 H 0.092 0.908 12 C -0.176 4.176 13 N -0.389 5.389 14 Si 0.889 3.111 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.205 1.205 18 H 0.061 0.939 19 H 0.053 0.947 20 H 0.075 0.925 21 H 0.107 0.893 22 H 0.107 0.893 23 H 0.209 0.791 24 H 0.218 0.782 25 H 0.188 0.812 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.180 0.237 -2.166 2.477 hybrid contribution 0.312 1.755 -0.934 2.012 sum 1.491 1.992 -3.099 3.975 Atomic orbital electron populations 1.20316 0.93425 0.99832 0.99793 1.19392 0.94570 0.92713 1.15272 1.19980 0.93168 0.95995 0.98488 1.19654 0.93749 0.94191 1.25262 1.17955 0.82754 0.93777 0.94353 1.42295 1.03963 1.09185 1.87486 1.17945 0.89861 0.82693 1.22542 1.85055 1.74750 1.37839 1.29618 1.17601 0.90211 0.92727 0.88429 1.20274 1.10593 0.96524 1.28360 0.90777 1.26668 0.92691 1.05274 0.93007 1.70288 1.23384 1.27797 1.17448 0.83660 0.76556 0.74059 0.76820 1.20232 1.20750 1.20478 0.93939 0.94738 0.92502 0.89283 0.89276 0.79116 0.78218 0.81211 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.61 36.00 0.35 -1.31 15 2 C -0.22 -5.36 5.90 -104.29 -0.62 -5.98 15 3 C -0.06 -1.32 9.60 -40.02 -0.38 -1.70 15 4 C -0.31 -6.93 9.89 -39.17 -0.39 -7.31 15 5 C 0.21 4.98 6.77 -83.59 -0.57 4.41 15 6 N -0.89 -16.70 9.09 32.49 0.30 -16.41 15 7 C -0.08 -2.06 5.72 -38.17 -0.22 -2.28 15 8 O -0.47 -11.54 9.73 -18.98 -0.18 -11.72 15 9 C 0.11 3.05 4.98 -106.71 -0.53 2.52 15 10 C -0.53 -14.20 8.02 -37.84 -0.30 -14.50 15 11 H 0.07 1.94 6.70 -52.49 -0.35 1.59 15 12 C 0.05 1.26 4.25 -17.33 -0.07 1.19 15 13 N -0.77 -21.47 12.03 55.55 0.67 -20.81 15 14 Si 1.06 22.48 30.00 -169.99 -5.10 17.38 15 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 16 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 18 H 0.04 0.89 8.14 -51.93 -0.42 0.46 15 19 H 0.03 0.64 8.08 -51.93 -0.42 0.22 15 20 H 0.06 1.23 6.42 -51.93 -0.33 0.90 15 21 H 0.09 1.79 8.06 -52.48 -0.42 1.37 15 22 H 0.09 1.80 8.06 -52.49 -0.42 1.38 15 23 H 0.38 6.09 8.84 -40.82 -0.36 5.73 15 24 H 0.39 6.98 8.20 -40.82 -0.33 6.64 15 25 H 0.34 7.18 9.06 45.56 0.41 7.59 15 26 H 0.29 8.72 7.11 -40.82 -0.29 8.43 15 LS Contribution 225.57 15.07 3.40 3.40 Total: -1.00 -29.40 225.57 -5.40 -34.80 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -1.74 Total: 18.32 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -2.73 Total: -24.96 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.96 Total: -37.21 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.18 Total: -11.72 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.10 Total: 17.38 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -29.40 -5.40 -34.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.430 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds