Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36480 * 119.97141 * 2 1 4 4 C 1.38758 * 120.60044 * 179.97438 * 3 2 1 5 5 C 1.38841 * 120.51668 * 0.02562 * 4 3 2 6 6 N 1.40020 * 120.03911 * 179.97438 * 5 4 3 7 7 C 1.39051 * 119.92561 * 359.69928 * 5 4 3 8 8 O 1.35757 * 120.29639 * 180.31677 * 7 5 4 9 9 C 1.40803 * 119.96874 * 179.97438 * 2 1 3 10 10 C 1.41177 * 120.25753 * 359.97438 * 9 2 1 11 11 H 1.07996 * 120.00074 * 38.31301 * 10 9 2 12 12 C 1.39919 * 120.00069 * 218.30895 * 10 9 2 13 13 N 1.30868 * 120.00172 * 24.62676 * 12 10 9 14 14 Si 1.86801 * 120.00038 * 204.35882 * 12 10 9 15 15 H 1.48507 * 109.46943 * 180.27501 * 14 12 10 16 16 H 1.48498 * 109.47011 * 300.27102 * 14 12 10 17 17 H 1.48497 * 109.47525 * 60.27355 * 14 12 10 18 18 H 1.09007 * 109.47059 * 270.02020 * 1 2 3 19 19 H 1.09001 * 109.47250 * 30.01954 * 1 2 3 20 20 H 1.09004 * 109.47286 * 150.01977 * 1 2 3 21 21 H 1.08003 * 119.70317 * 0.02562 * 3 2 1 22 22 H 1.08002 * 119.73858 * 180.02562 * 4 3 2 23 23 H 0.96997 * 119.99694 * 0.02562 * 6 5 4 24 24 H 0.96998 * 120.00149 * 179.97438 * 6 5 4 25 25 H 0.96698 * 114.00735 * 271.93393 * 8 7 5 26 26 H 0.97001 * 119.99509 * 5.29759 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1823 0.0000 4 6 3.5763 1.1975 0.0005 5 6 4.2944 0.0093 0.0005 6 7 5.6943 0.0363 0.0005 7 6 3.6218 -1.2077 0.0063 8 8 4.3164 -2.3741 0.0129 9 6 2.2103 -1.2198 0.0005 10 6 1.5093 -2.4452 0.0016 11 1 0.6039 -2.5499 -0.5778 12 6 1.9874 -3.5241 0.7533 13 7 2.7511 -3.3091 1.7941 14 14 1.5296 -5.2710 0.2757 15 1 2.1536 -6.2242 1.2284 16 1 0.0532 -5.4247 0.3173 17 1 2.0182 -5.5529 -1.0979 18 1 -0.3633 0.0004 1.0277 19 1 -0.3634 0.8898 -0.5141 20 1 -0.3634 -0.8902 -0.5135 21 1 1.6435 2.1145 0.0004 22 1 4.1017 2.1411 0.0009 23 1 6.1630 0.8855 0.0009 24 1 6.1955 -0.7942 0.0009 25 1 4.5440 -2.7014 -0.8681 26 1 2.9230 -2.4016 2.0903 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575719587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -58.288028 kcal Electronic energy + Delta-G solvation = -12087.953109 eV Core-core repulsion = 9936.866018 eV Total energy + Delta-G solvation = -2151.087092 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.32294 -37.08663 -36.20822 -34.49914 -31.34851 -30.36960 -27.05799 -25.98190 -22.92434 -21.62786 -19.60346 -18.41628 -17.54755 -17.00203 -15.90706 -15.57003 -15.45525 -14.66761 -14.49258 -14.08171 -13.52379 -13.08190 -12.90374 -12.71498 -12.27202 -12.17985 -11.94853 -11.51457 -10.94303 -10.79296 -10.39187 -9.19223 -8.98769 -8.01358 -6.28652 0.96888 1.14511 1.55306 1.68211 1.82208 2.44639 2.88497 3.27633 3.49667 4.00700 4.41284 4.66246 4.83858 4.93099 5.03345 5.19848 5.22230 5.51494 5.74091 5.83684 5.91276 6.09246 6.29032 6.38866 6.75164 6.87550 7.11573 7.23308 7.50601 8.30061 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.038100 B = 0.016595 C = 0.012321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.738923 B = 1686.885822 C = 2272.080769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.242 4.242 3 C -0.062 4.062 4 C -0.302 4.302 5 C 0.205 3.795 6 N -0.872 5.872 7 C -0.099 4.099 8 O -0.478 6.478 9 C 0.083 3.917 10 C -0.560 4.560 11 H 0.069 0.931 12 C 0.016 3.984 13 N -0.798 5.798 14 Si 1.114 2.886 15 H -0.280 1.280 16 H -0.265 1.265 17 H -0.265 1.265 18 H 0.041 0.959 19 H 0.063 0.937 20 H 0.046 0.954 21 H 0.121 0.879 22 H 0.119 0.881 23 H 0.400 0.600 24 H 0.396 0.604 25 H 0.350 0.650 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 2.585 -3.946 4.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.244 4.244 3 C -0.080 4.080 4 C -0.325 4.325 5 C 0.101 3.899 6 N -0.414 5.414 7 C -0.149 4.149 8 O -0.284 6.284 9 C 0.079 3.921 10 C -0.588 4.588 11 H 0.087 0.913 12 C -0.202 4.202 13 N -0.419 5.419 14 Si 0.933 3.067 15 H -0.205 1.205 16 H -0.190 1.190 17 H -0.190 1.190 18 H 0.060 0.940 19 H 0.082 0.918 20 H 0.065 0.935 21 H 0.139 0.861 22 H 0.137 0.863 23 H 0.229 0.771 24 H 0.224 0.776 25 H 0.201 0.799 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.404 1.081 -2.872 3.374 hybrid contribution 0.331 1.707 -0.767 1.900 sum 1.734 2.788 -3.638 4.901 Atomic orbital electron populations 1.20284 0.91744 1.00781 1.00023 1.19834 0.96259 0.92827 1.15494 1.20370 0.93667 0.96710 0.97295 1.20107 0.94051 0.95149 1.23229 1.18103 0.84647 0.93295 0.93847 1.42176 1.02376 1.10534 1.86304 1.18232 0.90027 0.83666 1.22987 1.85005 1.74619 1.38044 1.30688 1.18047 0.91265 0.93712 0.89074 1.20378 1.11219 0.97618 1.29623 0.91308 1.27967 0.91526 1.08803 0.91880 1.70447 1.26472 1.25882 1.19129 0.83036 0.77230 0.69481 0.76945 1.20509 1.18978 1.19001 0.93990 0.91768 0.93522 0.86121 0.86304 0.77114 0.77591 0.79913 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.01 9.61 71.23 0.68 -2.33 15 2 C -0.24 -11.76 5.90 -19.65 -0.12 -11.87 15 3 C -0.06 -2.69 9.60 21.98 0.21 -2.48 15 4 C -0.30 -12.87 9.89 22.54 0.22 -12.65 15 5 C 0.21 9.22 6.77 38.17 0.26 9.48 15 6 N -0.87 -30.80 9.09 -51.11 -0.46 -31.27 15 7 C -0.10 -5.07 5.72 23.18 0.13 -4.94 15 8 O -0.48 -23.72 9.73 -90.83 -0.88 -24.60 15 9 C 0.08 4.45 4.98 -21.21 -0.11 4.35 15 10 C -0.56 -30.55 8.02 23.40 0.19 -30.37 15 11 H 0.07 3.69 6.70 -2.91 -0.02 3.67 15 12 C 0.02 0.85 4.25 85.24 0.36 1.22 15 13 N -0.80 -45.63 12.03 21.82 0.26 -45.37 15 14 Si 1.11 45.42 30.00 68.60 2.06 47.48 15 15 H -0.28 -11.43 7.11 99.48 0.71 -10.72 15 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 17 H -0.27 -10.11 7.11 99.48 0.71 -9.41 15 18 H 0.04 1.73 8.14 -2.38 -0.02 1.71 15 19 H 0.06 2.25 8.08 -2.39 -0.02 2.23 15 20 H 0.05 2.01 6.42 -2.38 -0.02 2.00 15 21 H 0.12 4.41 8.06 -2.91 -0.02 4.39 15 22 H 0.12 4.31 8.06 -2.91 -0.02 4.28 15 23 H 0.40 11.48 8.84 -92.71 -0.82 10.66 15 24 H 0.40 13.43 8.20 -92.71 -0.76 12.67 15 25 H 0.35 14.93 9.06 -74.06 -0.67 14.26 15 26 H 0.27 16.61 7.11 -92.71 -0.66 15.95 15 Total: -1.00 -62.84 225.57 1.90 -60.94 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -0.91 Total: 42.40 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 1.84 Total: -49.58 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -0.20 Total: -76.64 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.88 Total: -24.60 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.06 Total: 47.48 kcal Total: -62.84 1.90 -60.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575719587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.652 kcal (2) G-P(sol) polarization free energy of solvation -62.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds