Wall clock time and date at job start Mon Mar 30 2020 01:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 119.62025 * 2 1 4 4 C 1.38628 * 119.16579 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.79381 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47190 * 340.00229 * 5 4 3 7 7 O 1.42904 * 109.47133 * 220.00249 * 5 4 3 8 8 C 1.50700 * 109.47243 * 100.00221 * 5 4 3 9 9 H 1.08006 * 119.99631 * 0.02562 * 8 5 4 10 10 C 1.37873 * 119.99888 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99745 * 179.97438 * 10 8 5 12 12 Si 1.86798 * 120.00471 * 0.02562 * 10 8 5 13 13 H 1.48498 * 109.47046 * 89.99131 * 12 10 8 14 14 H 1.48495 * 109.47373 * 209.99922 * 12 10 8 15 15 H 1.48502 * 109.46588 * 329.99634 * 12 10 8 16 16 C 1.38677 * 118.41857 * 0.02562 * 4 3 2 17 17 C 1.38184 * 119.16194 * 0.02562 * 16 4 3 18 18 N 1.31854 * 119.61642 * 179.97438 * 2 1 3 19 19 H 1.08998 * 109.47155 * 270.01939 * 1 2 3 20 20 H 1.09000 * 109.46945 * 30.02424 * 1 2 3 21 21 H 1.09005 * 109.47361 * 150.01716 * 1 2 3 22 22 H 1.08004 * 120.42025 * 359.95606 * 3 2 1 23 23 H 0.96696 * 113.99899 * 299.99863 * 7 5 4 24 24 H 0.97003 * 119.99943 * 180.02562 * 11 10 8 25 25 H 1.07996 * 120.42283 * 179.97438 * 16 4 3 26 26 H 1.07999 * 119.61911 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2015 0.0000 4 6 3.5763 1.1905 0.0005 5 6 4.3581 2.4789 0.0011 6 1 3.7211 3.2906 -0.3504 7 8 5.4879 2.3510 -0.8645 8 6 4.8291 2.7801 1.4006 9 1 4.5869 2.1056 2.2087 10 6 5.5700 3.9159 1.6491 11 7 5.9807 4.1790 2.8705 12 14 5.9895 5.0820 0.2514 13 1 4.9220 6.1064 0.1241 14 1 7.2851 5.7496 0.5355 15 1 6.0948 4.3166 -1.0169 16 6 4.2266 -0.0343 0.0005 17 6 3.4766 -1.1949 -0.0006 18 7 2.1586 -1.1463 0.0005 19 1 -0.3633 0.0003 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5136 22 1 1.6507 2.1373 -0.0007 23 1 6.0994 1.6460 -0.6114 24 1 6.5016 4.9783 3.0455 25 1 5.3056 -0.0806 0.0005 26 1 3.9754 -2.1528 -0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248613.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:17 Heat of formation + Delta-G solvation = -22.337796 kcal Electronic energy + Delta-G solvation = -11667.629673 eV Core-core repulsion = 9518.101501 eV Total energy + Delta-G solvation = -2149.528173 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.76627 -36.34451 -32.41998 -32.36004 -31.86449 -27.64995 -27.03597 -23.43217 -22.48085 -20.02329 -17.55902 -16.22858 -15.90699 -14.98278 -14.83197 -14.04887 -13.93087 -13.31102 -12.86262 -12.78141 -12.22897 -12.09256 -11.81072 -11.19285 -11.08700 -10.77151 -10.40276 -9.40704 -9.16191 -8.82765 -8.69445 -8.43534 -8.39697 -6.23884 -4.37584 1.63300 1.88895 3.31029 3.41108 3.65495 4.29442 4.42789 4.71054 5.04556 5.20482 5.37199 5.60505 5.68234 5.75489 5.79213 5.88692 5.94972 6.19220 6.30295 6.63380 6.66074 7.21485 7.28157 7.38277 8.15987 8.44902 8.67202 8.85067 9.37510 10.86031 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.053708 B = 0.010668 C = 0.010377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.209772 B = 2623.938655 C = 2697.672614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.115 3.885 3 C -0.172 4.172 4 C -0.019 4.019 5 C 0.224 3.776 6 H 0.070 0.930 7 O -0.575 6.575 8 C -0.561 4.561 9 H 0.074 0.926 10 C 0.087 3.913 11 N -0.886 5.886 12 Si 0.870 3.130 13 H -0.285 1.285 14 H -0.292 1.292 15 H -0.217 1.217 16 C -0.171 4.171 17 C 0.093 3.907 18 N -0.504 5.504 19 H 0.073 0.927 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.129 0.871 23 H 0.358 0.642 24 H 0.267 0.733 25 H 0.130 0.870 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -5.851 -6.339 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.022 4.022 3 C -0.192 4.192 4 C -0.027 4.027 5 C 0.167 3.833 6 H 0.087 0.913 7 O -0.381 6.381 8 C -0.598 4.598 9 H 0.092 0.908 10 C -0.119 4.119 11 N -0.522 5.522 12 Si 0.696 3.304 13 H -0.211 1.211 14 H -0.219 1.219 15 H -0.140 1.140 16 C -0.191 4.191 17 C -0.063 4.063 18 N -0.215 5.215 19 H 0.092 0.908 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.147 0.853 23 H 0.205 0.795 24 H 0.077 0.923 25 H 0.148 0.852 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.194 -6.016 -6.535 10.829 hybrid contribution 1.060 1.042 0.042 1.487 sum -5.135 -4.975 -6.494 9.658 Atomic orbital electron populations 1.20633 0.89515 1.02751 1.02643 1.21132 0.96525 0.88599 0.95966 1.21789 0.94625 0.98882 1.03886 1.21420 0.94145 0.97671 0.89440 1.18915 0.84281 0.88904 0.91245 0.91270 1.86738 1.36946 1.57764 1.56650 1.21310 1.36315 1.09802 0.92350 0.90770 1.24986 0.93828 0.97233 0.95818 1.69940 1.35465 1.26574 1.20238 0.87036 0.77508 0.80183 0.85708 1.21107 1.21893 1.13986 1.21852 1.01394 0.92881 1.02968 1.22536 0.89490 0.98005 0.96252 1.67399 1.10069 1.29374 1.14675 0.90845 0.91083 0.91059 0.85297 0.79498 0.92292 0.85193 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.17 36.00 0.37 -0.91 15 2 C 0.12 1.99 6.78 -82.59 -0.56 1.43 15 3 C -0.17 -3.23 9.41 -39.45 -0.37 -3.60 15 4 C -0.02 -0.38 4.94 -104.32 -0.51 -0.90 15 5 C 0.22 5.17 2.59 -29.03 -0.08 5.09 15 6 H 0.07 1.61 7.47 -51.93 -0.39 1.22 15 7 O -0.57 -12.71 10.00 -35.23 -0.35 -13.06 15 8 C -0.56 -15.28 9.33 -34.44 -0.32 -15.60 15 9 H 0.07 2.23 7.98 -52.48 -0.42 1.82 15 10 C 0.09 2.44 5.47 -17.82 -0.10 2.34 15 11 N -0.89 -26.47 13.96 55.43 0.77 -25.70 15 12 Si 0.87 21.09 26.99 -169.99 -4.59 16.50 15 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 15 H -0.22 -5.14 5.31 56.52 0.30 -4.84 15 16 C -0.17 -3.16 9.41 -39.44 -0.37 -3.53 15 17 C 0.09 1.59 11.18 -17.55 -0.20 1.40 15 18 N -0.50 -9.10 10.27 -9.48 -0.10 -9.19 15 19 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.07 0.79 8.08 -51.93 -0.42 0.37 15 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.13 2.20 8.06 -52.48 -0.42 1.78 15 23 H 0.36 6.91 7.59 45.56 0.35 7.25 15 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 25 H 0.13 2.17 6.90 -52.49 -0.36 1.80 15 26 H 0.15 2.00 8.06 -52.49 -0.42 1.57 15 LS Contribution 228.75 15.07 3.45 3.45 Total: -1.00 -31.32 228.75 -5.13 -36.45 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.17 Total: 5.82 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.14 Total: -14.27 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.68 Total: -34.89 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.35 Total: -13.06 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.59 Total: 16.50 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -31.32 -5.13 -36.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248613.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.116 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds