Wall clock time and date at job start Mon Mar 30 2020 01:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 119.62025 * 2 1 4 4 C 1.38628 * 119.16579 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.79381 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47190 * 340.00229 * 5 4 3 7 7 O 1.42904 * 109.47133 * 220.00249 * 5 4 3 8 8 C 1.50700 * 109.47243 * 100.00221 * 5 4 3 9 9 H 1.08006 * 119.99631 * 0.02562 * 8 5 4 10 10 C 1.37873 * 119.99888 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99745 * 179.97438 * 10 8 5 12 12 Si 1.86798 * 120.00471 * 0.02562 * 10 8 5 13 13 H 1.48498 * 109.47046 * 89.99131 * 12 10 8 14 14 H 1.48495 * 109.47373 * 209.99922 * 12 10 8 15 15 H 1.48502 * 109.46588 * 329.99634 * 12 10 8 16 16 C 1.38677 * 118.41857 * 0.02562 * 4 3 2 17 17 C 1.38184 * 119.16194 * 0.02562 * 16 4 3 18 18 N 1.31854 * 119.61642 * 179.97438 * 2 1 3 19 19 H 1.08998 * 109.47155 * 270.01939 * 1 2 3 20 20 H 1.09000 * 109.46945 * 30.02424 * 1 2 3 21 21 H 1.09005 * 109.47361 * 150.01716 * 1 2 3 22 22 H 1.08004 * 120.42025 * 359.95606 * 3 2 1 23 23 H 0.96696 * 113.99899 * 299.99863 * 7 5 4 24 24 H 0.97003 * 119.99943 * 180.02562 * 11 10 8 25 25 H 1.07996 * 120.42283 * 179.97438 * 16 4 3 26 26 H 1.07999 * 119.61911 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2015 0.0000 4 6 3.5763 1.1905 0.0005 5 6 4.3581 2.4789 0.0011 6 1 3.7211 3.2906 -0.3504 7 8 5.4879 2.3510 -0.8645 8 6 4.8291 2.7801 1.4006 9 1 4.5869 2.1056 2.2087 10 6 5.5700 3.9159 1.6491 11 7 5.9807 4.1790 2.8705 12 14 5.9895 5.0820 0.2514 13 1 4.9220 6.1064 0.1241 14 1 7.2851 5.7496 0.5355 15 1 6.0948 4.3166 -1.0169 16 6 4.2266 -0.0343 0.0005 17 6 3.4766 -1.1949 -0.0006 18 7 2.1586 -1.1463 0.0005 19 1 -0.3633 0.0003 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5136 22 1 1.6507 2.1373 -0.0007 23 1 6.0994 1.6460 -0.6114 24 1 6.5016 4.9783 3.0455 25 1 5.3056 -0.0806 0.0005 26 1 3.9754 -2.1528 -0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248613.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:17 Heat of formation + Delta-G solvation = -45.158454 kcal Electronic energy + Delta-G solvation = -11668.619251 eV Core-core repulsion = 9518.101501 eV Total energy + Delta-G solvation = -2150.517751 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.17461 -38.08764 -34.51662 -33.70958 -33.34527 -29.44937 -28.37506 -25.19355 -23.92451 -21.58701 -19.55173 -17.80347 -17.39482 -16.88001 -16.33205 -15.57692 -15.30570 -15.04661 -14.74399 -14.11594 -13.87080 -13.36970 -13.10291 -12.98841 -12.72509 -12.47121 -12.17200 -11.40587 -10.94914 -10.65303 -10.33134 -10.12601 -9.77684 -8.40402 -6.58074 0.26547 0.41308 1.39128 1.44848 1.73113 2.39778 2.89016 2.97704 3.49782 3.80405 3.94456 4.00935 4.28984 4.31969 4.65533 4.73774 4.81573 4.82052 5.02561 5.19731 5.25712 5.34045 5.65333 5.87926 6.02370 6.53795 7.03623 7.08600 7.23006 8.73442 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.053708 B = 0.010668 C = 0.010377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.209772 B = 2623.938655 C = 2697.672614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.112 3.888 3 C -0.186 4.186 4 C -0.048 4.048 5 C 0.234 3.766 6 H 0.069 0.931 7 O -0.575 6.575 8 C -0.560 4.560 9 H 0.031 0.969 10 C 0.033 3.967 11 N -0.934 5.934 12 Si 0.939 3.061 13 H -0.280 1.280 14 H -0.294 1.294 15 H -0.205 1.205 16 C -0.182 4.182 17 C 0.096 3.904 18 N -0.515 5.515 19 H 0.083 0.917 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.140 0.860 23 H 0.370 0.630 24 H 0.270 0.730 25 H 0.142 0.858 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 -6.375 -7.877 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.025 4.025 3 C -0.206 4.206 4 C -0.056 4.056 5 C 0.176 3.824 6 H 0.087 0.913 7 O -0.383 6.383 8 C -0.597 4.597 9 H 0.050 0.950 10 C -0.167 4.167 11 N -0.573 5.573 12 Si 0.762 3.238 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.127 1.127 16 C -0.202 4.202 17 C -0.060 4.060 18 N -0.226 5.226 19 H 0.102 0.898 20 H 0.109 0.891 21 H 0.101 0.899 22 H 0.158 0.842 23 H 0.219 0.781 24 H 0.079 0.921 25 H 0.160 0.840 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.906 -6.560 -8.080 12.491 hybrid contribution 1.241 1.090 0.569 1.747 sum -5.665 -5.470 -7.511 10.882 Atomic orbital electron populations 1.20746 0.86456 1.04346 1.03756 1.21753 0.98584 0.87817 0.94334 1.22018 0.94172 1.00213 1.04223 1.21333 0.95082 0.97268 0.91908 1.18614 0.84613 0.90534 0.88630 0.91342 1.86655 1.37072 1.58592 1.55996 1.21505 1.35834 1.08744 0.93612 0.95045 1.25862 0.93794 0.99025 0.98063 1.70067 1.37087 1.27617 1.22508 0.85973 0.77029 0.77937 0.82815 1.20644 1.22019 1.12714 1.22062 1.02251 0.92771 1.03137 1.23082 0.89350 0.98964 0.94598 1.67539 1.10540 1.29663 1.14859 0.89798 0.89085 0.89930 0.84216 0.78060 0.92107 0.84040 0.79995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.22 10.17 71.23 0.72 -1.50 15 2 C 0.11 3.67 6.78 42.55 0.29 3.96 15 3 C -0.19 -6.78 9.41 22.36 0.21 -6.57 15 4 C -0.05 -1.93 4.94 -19.67 -0.10 -2.03 15 5 C 0.23 10.64 2.59 29.10 0.08 10.72 15 6 H 0.07 3.11 7.47 -2.39 -0.02 3.09 15 7 O -0.58 -24.49 10.00 -148.98 -1.49 -25.98 15 8 C -0.56 -30.96 9.33 25.60 0.24 -30.72 15 9 H 0.03 1.96 7.98 -2.91 -0.02 1.94 15 10 C 0.03 1.88 5.47 84.65 0.46 2.34 15 11 N -0.93 -56.99 13.96 21.45 0.30 -56.70 15 12 Si 0.94 43.54 26.99 68.60 1.85 45.39 15 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 14 H -0.29 -13.57 7.11 99.48 0.71 -12.86 15 15 H -0.21 -9.04 5.31 99.48 0.53 -8.51 15 16 C -0.18 -6.51 9.41 22.36 0.21 -6.30 15 17 C 0.10 3.07 11.18 84.67 0.95 4.01 15 18 N -0.51 -17.44 10.27 -183.90 -1.89 -19.33 15 19 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.09 1.74 8.08 -2.39 -0.02 1.72 15 21 H 0.08 1.74 8.14 -2.38 -0.02 1.72 15 22 H 0.14 4.60 8.06 -2.91 -0.02 4.58 15 23 H 0.37 13.75 7.59 -74.06 -0.56 13.18 15 24 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 25 H 0.14 4.55 6.90 -2.91 -0.02 4.53 15 26 H 0.18 4.37 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -66.87 228.75 2.27 -64.59 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.44 Total: 18.12 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.06 Total: -26.09 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.59 Total: -76.03 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.49 Total: -25.98 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.85 Total: 45.39 kcal Total: -66.87 2.27 -64.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248613.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.433 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds