Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.62033 * 2 1 4 4 C 1.38627 * 119.16050 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.78770 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47389 * 24.97667 * 5 4 3 7 7 O 1.42909 * 109.46991 * 144.97864 * 5 4 3 8 8 C 1.50694 * 109.47062 * 264.97325 * 5 4 3 9 9 H 1.07998 * 120.00462 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00039 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99895 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99833 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.46915 * 60.00537 * 12 10 8 14 14 H 1.48498 * 109.46980 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47453 * 300.00293 * 12 10 8 16 16 C 1.38678 * 118.42399 * 0.02562 * 4 3 2 17 17 C 1.38176 * 119.15893 * 0.02562 * 16 4 3 18 18 N 1.31860 * 119.61682 * 180.02562 * 2 1 3 19 19 H 1.09000 * 109.47210 * 269.97459 * 1 2 3 20 20 H 1.08999 * 109.47009 * 29.97609 * 1 2 3 21 21 H 1.09003 * 109.47109 * 149.97057 * 1 2 3 22 22 H 1.07999 * 120.42075 * 0.05145 * 3 2 1 23 23 H 0.96696 * 113.99726 * 59.99557 * 7 5 4 24 24 H 0.96995 * 119.99827 * 179.97438 * 11 10 8 25 25 H 1.07995 * 120.42098 * 179.97438 * 16 4 3 26 26 H 1.07995 * 119.61795 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.3582 2.4789 0.0000 6 1 3.7504 3.2725 0.4347 7 8 5.5489 2.3132 0.7727 8 6 4.7246 2.8447 -1.4152 9 1 4.4214 2.2082 -2.2333 10 6 5.4461 3.9926 -1.6657 11 7 5.8150 4.7680 -0.6696 12 14 5.8997 4.4464 -3.4201 13 1 4.6622 4.6182 -4.2226 14 1 6.6702 5.7159 -3.4196 15 1 6.7279 3.3656 -4.0127 16 6 4.2267 -0.0344 -0.0016 17 6 3.4766 -1.1949 -0.0026 18 7 2.1587 -1.1463 -0.0005 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8897 -0.5143 22 1 1.6509 2.1373 0.0008 23 1 6.1387 1.6216 0.4428 24 1 6.3229 5.5754 -0.8458 25 1 5.3057 -0.0807 -0.0025 26 1 3.9754 -2.1527 -0.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248614.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = -28.347669 kcal Electronic energy + Delta-G solvation = -11625.748615 eV Core-core repulsion = 9475.959835 eV Total energy + Delta-G solvation = -2149.788780 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.66000 -35.96666 -32.38876 -32.16214 -31.71032 -27.39138 -26.76009 -23.52381 -22.44708 -20.01679 -17.14439 -16.14910 -15.81357 -14.90337 -14.61941 -14.01750 -13.96927 -13.00395 -12.78342 -12.56390 -12.12686 -12.00550 -11.37842 -11.12062 -11.01765 -10.88938 -10.33110 -9.63694 -9.12303 -8.80791 -8.58812 -8.36729 -8.27312 -6.13347 -4.33591 1.70738 1.98884 3.23296 3.28511 3.31059 4.26495 4.42347 4.77334 5.11289 5.27121 5.48316 5.72050 5.78165 5.82674 5.96191 5.97646 6.20321 6.30898 6.38374 6.79497 6.86275 7.33718 7.58178 7.71419 7.97168 8.51897 8.68359 9.18535 9.42437 10.90294 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.047694 B = 0.010397 C = 0.009850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.935689 B = 2692.359758 C = 2841.859904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.113 3.887 3 C -0.172 4.172 4 C -0.025 4.025 5 C 0.258 3.742 6 H 0.072 0.928 7 O -0.558 6.558 8 C -0.568 4.568 9 H 0.058 0.942 10 C 0.081 3.919 11 N -0.857 5.857 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.176 4.176 17 C 0.092 3.908 18 N -0.507 5.507 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.129 0.871 23 H 0.347 0.653 24 H 0.264 0.736 25 H 0.128 0.872 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 -6.680 0.344 8.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.024 4.024 3 C -0.192 4.192 4 C -0.033 4.033 5 C 0.200 3.800 6 H 0.090 0.910 7 O -0.361 6.361 8 C -0.605 4.605 9 H 0.076 0.924 10 C -0.126 4.126 11 N -0.492 5.492 12 Si 0.722 3.278 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.200 1.200 16 C -0.196 4.196 17 C -0.065 4.065 18 N -0.218 5.218 19 H 0.089 0.911 20 H 0.090 0.910 21 H 0.089 0.911 22 H 0.147 0.853 23 H 0.192 0.808 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.720 -6.783 0.766 8.906 hybrid contribution 1.063 0.656 -1.383 1.864 sum -4.657 -6.126 -0.617 7.720 Atomic orbital electron populations 1.20625 0.89633 1.02827 1.02399 1.21136 0.96448 0.88693 0.96160 1.21782 0.94745 0.98728 1.03915 1.21907 0.94418 0.98472 0.88484 1.18553 0.82649 0.86788 0.92007 0.91049 1.86624 1.33700 1.59686 1.56120 1.21425 1.38106 1.09089 0.91922 0.92423 1.25046 0.94777 0.95565 0.97204 1.70058 1.35357 1.13045 1.30762 0.86620 0.78742 0.77902 0.84502 1.20005 1.21006 1.19988 1.21858 1.01310 0.92980 1.03453 1.22509 0.89540 0.97944 0.96482 1.67390 1.10045 1.29387 1.15009 0.91058 0.91039 0.91112 0.85346 0.80820 0.92613 0.85368 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.17 36.01 0.37 -0.95 15 2 C 0.11 2.02 6.78 -82.58 -0.56 1.46 15 3 C -0.17 -3.37 9.43 -39.44 -0.37 -3.74 15 4 C -0.02 -0.53 4.97 -104.31 -0.52 -1.05 15 5 C 0.26 6.47 3.10 -29.04 -0.09 6.38 15 6 H 0.07 1.93 8.07 -51.93 -0.42 1.52 15 7 O -0.56 -14.13 12.54 -35.23 -0.44 -14.57 15 8 C -0.57 -15.33 8.74 -34.44 -0.30 -15.63 15 9 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 10 C 0.08 2.22 5.40 -17.82 -0.10 2.12 15 11 N -0.86 -24.68 12.84 55.43 0.71 -23.97 15 12 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 15 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 16 C -0.18 -3.37 9.41 -39.44 -0.37 -3.74 15 17 C 0.09 1.60 11.18 -17.55 -0.20 1.41 15 18 N -0.51 -9.38 10.27 -9.48 -0.10 -9.48 15 19 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 20 H 0.07 0.85 8.08 -51.93 -0.42 0.43 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.13 2.34 8.06 -52.49 -0.42 1.92 15 23 H 0.35 7.66 7.48 45.56 0.34 8.01 15 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 25 H 0.13 2.23 6.74 -52.49 -0.35 1.88 15 26 H 0.15 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 234.52 15.07 3.53 3.53 Total: -1.00 -30.57 234.52 -5.54 -36.11 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -2.08 Total: 6.33 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.14 Total: -13.73 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.61 Total: -33.45 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.44 Total: -14.57 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.57 -5.54 -36.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248614.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.760 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds