Wall clock time and date at job start Mon Mar 30 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.62033 * 2 1 4 4 C 1.38627 * 119.16050 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.78770 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47389 * 24.97667 * 5 4 3 7 7 O 1.42909 * 109.46991 * 144.97864 * 5 4 3 8 8 C 1.50694 * 109.47062 * 264.97325 * 5 4 3 9 9 H 1.07998 * 120.00462 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00039 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99895 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 119.99833 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.46915 * 60.00537 * 12 10 8 14 14 H 1.48498 * 109.46980 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47453 * 300.00293 * 12 10 8 16 16 C 1.38678 * 118.42399 * 0.02562 * 4 3 2 17 17 C 1.38176 * 119.15893 * 0.02562 * 16 4 3 18 18 N 1.31860 * 119.61682 * 180.02562 * 2 1 3 19 19 H 1.09000 * 109.47210 * 269.97459 * 1 2 3 20 20 H 1.08999 * 109.47009 * 29.97609 * 1 2 3 21 21 H 1.09003 * 109.47109 * 149.97057 * 1 2 3 22 22 H 1.07999 * 120.42075 * 0.05145 * 3 2 1 23 23 H 0.96696 * 113.99726 * 59.99557 * 7 5 4 24 24 H 0.96995 * 119.99827 * 179.97438 * 11 10 8 25 25 H 1.07995 * 120.42098 * 179.97438 * 16 4 3 26 26 H 1.07995 * 119.61795 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.3582 2.4789 0.0000 6 1 3.7504 3.2725 0.4347 7 8 5.5489 2.3132 0.7727 8 6 4.7246 2.8447 -1.4152 9 1 4.4214 2.2082 -2.2333 10 6 5.4461 3.9926 -1.6657 11 7 5.8150 4.7680 -0.6696 12 14 5.8997 4.4464 -3.4201 13 1 4.6622 4.6182 -4.2226 14 1 6.6702 5.7159 -3.4196 15 1 6.7279 3.3656 -4.0127 16 6 4.2267 -0.0344 -0.0016 17 6 3.4766 -1.1949 -0.0026 18 7 2.1587 -1.1463 -0.0005 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8897 -0.5143 22 1 1.6509 2.1373 0.0008 23 1 6.1387 1.6216 0.4428 24 1 6.3229 5.5754 -0.8458 25 1 5.3057 -0.0807 -0.0025 26 1 3.9754 -2.1527 -0.0031 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248614.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:18 Heat of formation + Delta-G solvation = -50.005394 kcal Electronic energy + Delta-G solvation = -11626.687765 eV Core-core repulsion = 9475.959835 eV Total energy + Delta-G solvation = -2150.727930 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.13335 -37.85320 -34.38521 -33.63986 -33.28926 -29.08826 -28.30226 -25.37327 -23.92578 -21.62666 -19.19470 -17.75879 -17.32925 -16.76775 -16.26222 -15.72528 -15.30742 -14.77870 -14.50900 -14.08943 -13.51133 -13.29543 -13.04767 -12.96285 -12.82219 -12.39833 -12.17249 -11.55028 -10.91340 -10.70401 -10.29483 -10.09382 -9.76442 -8.20968 -6.49008 0.27938 0.44384 1.39702 1.40524 1.49525 2.35029 2.93506 3.04884 3.50860 3.87320 4.01945 4.19394 4.33111 4.36218 4.68170 4.77007 4.82188 4.86646 5.14197 5.23053 5.29518 5.56498 5.77666 5.88254 5.95497 6.59978 7.09477 7.22452 7.39176 8.82770 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.047694 B = 0.010397 C = 0.009850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.935689 B = 2692.359758 C = 2841.859904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.114 3.886 3 C -0.188 4.188 4 C -0.050 4.050 5 C 0.261 3.739 6 H 0.038 0.962 7 O -0.573 6.573 8 C -0.579 4.579 9 H 0.054 0.946 10 C 0.031 3.969 11 N -0.895 5.895 12 Si 0.963 3.037 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.267 1.267 16 C -0.185 4.185 17 C 0.099 3.901 18 N -0.515 5.515 19 H 0.089 0.911 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.132 0.868 23 H 0.360 0.640 24 H 0.266 0.734 25 H 0.140 0.860 26 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -8.011 -0.544 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 C -0.208 4.208 4 C -0.058 4.058 5 C 0.203 3.797 6 H 0.056 0.944 7 O -0.378 6.378 8 C -0.616 4.616 9 H 0.072 0.928 10 C -0.172 4.172 11 N -0.532 5.532 12 Si 0.787 3.213 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.192 1.192 16 C -0.205 4.205 17 C -0.057 4.057 18 N -0.226 5.226 19 H 0.107 0.893 20 H 0.104 0.896 21 H 0.100 0.900 22 H 0.150 0.850 23 H 0.206 0.794 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.294 -8.130 -0.124 10.282 hybrid contribution 1.205 1.009 -1.053 1.892 sum -5.089 -7.120 -1.177 8.831 Atomic orbital electron populations 1.20737 0.86448 1.04111 1.03934 1.21733 0.98541 0.87726 0.94305 1.21937 0.94224 0.99943 1.04675 1.21641 0.95246 0.97736 0.91218 1.18252 0.82600 0.88050 0.90781 0.94424 1.86551 1.34340 1.60551 1.56395 1.21693 1.37988 1.09181 0.92775 0.92797 1.25885 0.94612 0.95404 1.01319 1.70182 1.36340 1.13605 1.33041 0.85555 0.78584 0.77769 0.79373 1.19428 1.20525 1.19162 1.22032 1.02146 0.92663 1.03646 1.23085 0.89332 0.98867 0.94463 1.67550 1.10505 1.29442 1.15100 0.89251 0.89613 0.89984 0.85028 0.79417 0.92533 0.84211 0.79814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 10.17 71.24 0.72 -1.57 15 2 C 0.11 3.86 6.78 42.55 0.29 4.15 15 3 C -0.19 -7.30 9.43 22.36 0.21 -7.09 15 4 C -0.05 -2.18 4.97 -19.67 -0.10 -2.28 15 5 C 0.26 13.46 3.10 29.10 0.09 13.55 15 6 H 0.04 2.16 8.07 -2.39 -0.02 2.14 15 7 O -0.57 -29.67 12.54 -148.98 -1.87 -31.54 15 8 C -0.58 -31.64 8.74 25.60 0.22 -31.41 15 9 H 0.05 2.92 7.74 -2.91 -0.02 2.90 15 10 C 0.03 1.71 5.40 84.66 0.46 2.17 15 11 N -0.90 -52.42 12.84 21.45 0.28 -52.15 15 12 Si 0.96 42.64 29.54 68.60 2.03 44.66 15 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 14 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 16 C -0.19 -6.88 9.41 22.36 0.21 -6.67 15 17 C 0.10 3.21 11.18 84.67 0.95 4.15 15 18 N -0.51 -17.75 10.27 -183.89 -1.89 -19.64 15 19 H 0.09 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.09 1.83 8.08 -2.39 -0.02 1.81 15 21 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.13 4.85 8.06 -2.91 -0.02 4.83 15 23 H 0.36 16.08 7.48 -74.06 -0.55 15.53 15 24 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 25 H 0.14 4.71 6.74 -2.91 -0.02 4.69 15 26 H 0.18 4.43 8.06 -2.91 -0.02 4.41 15 Total: -1.00 -65.01 234.52 2.23 -62.79 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.63 Total: 20.88 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.05 Total: -25.00 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.61 Total: -71.79 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.87 Total: -31.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -65.01 2.23 -62.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248614.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.780 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds