Wall clock time and date at job start Mon Mar 30 2020 01:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00081 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00387 * 3 2 1 6 6 H 1.48503 * 109.47284 * 149.99728 * 3 2 1 7 7 C 1.40167 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.39850 * 119.99948 * 0.27825 * 7 2 1 10 10 C 1.39417 * 126.86920 * 359.40828 * 9 7 2 11 11 N 1.33334 * 107.08293 * 179.89415 * 10 9 7 12 12 C 1.30801 * 109.24652 * 0.37376 * 11 10 9 13 13 C 1.50701 * 125.15145 * 179.79420 * 12 11 10 14 14 C 1.52998 * 109.47147 * 89.95730 * 13 12 11 15 15 C 1.53004 * 117.50158 * 243.74740 * 14 13 12 16 16 C 1.53004 * 117.49819 * 175.08570 * 14 13 12 17 17 O 1.34015 * 109.69638 * 359.75923 * 12 11 10 18 18 H 0.97005 * 120.00101 * 359.97438 * 1 2 3 19 19 H 1.08004 * 126.46159 * 0.03795 * 10 9 7 20 20 H 1.09001 * 109.47452 * 209.96455 * 13 12 11 21 21 H 1.09000 * 109.46866 * 329.96346 * 13 12 11 22 22 H 1.08996 * 115.54852 * 29.42680 * 14 13 12 23 23 H 1.08994 * 117.49938 * 0.02562 * 15 14 13 24 24 H 1.09004 * 117.49335 * 145.02012 * 15 14 13 25 25 H 1.09003 * 117.49999 * 214.98261 * 16 14 13 26 26 H 1.08994 * 117.49830 * 0.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4894 2.0465 -1.4001 5 1 1.4393 2.6527 0.7001 6 1 3.5395 1.4403 0.7001 7 6 2.0088 -1.2139 0.0005 8 1 3.0888 -1.2138 0.0001 9 6 1.3096 -2.4250 -0.0048 10 6 -0.0745 -2.5918 0.0006 11 7 -0.3109 -3.9040 -0.0100 12 6 0.8280 -4.5473 -0.0134 13 6 0.9775 -6.0468 -0.0205 14 6 1.0266 -6.5477 -1.4653 15 6 -0.1056 -7.4638 -1.9344 16 6 1.2918 -8.0380 -1.6878 17 8 1.8418 -3.6708 -0.0104 18 1 -0.4850 0.8401 0.0004 19 1 -0.8157 -1.8063 0.0091 20 1 1.8996 -6.3225 0.4912 21 1 0.1284 -6.4990 0.4921 22 1 1.4420 -5.8487 -2.1913 23 1 -0.8856 -7.7093 -1.2138 24 1 -0.4347 -7.3676 -2.9691 25 1 1.8814 -8.3195 -2.5604 26 1 1.4310 -8.6617 -0.8049 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642886506.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:19 Heat of formation + Delta-G solvation = -1.601567 kcal Electronic energy + Delta-G solvation = -11459.566879 eV Core-core repulsion = 9310.937896 eV Total energy + Delta-G solvation = -2148.628982 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.04592 -38.36332 -36.04067 -34.82775 -32.01740 -29.86016 -26.07402 -23.21632 -22.84308 -22.16528 -21.08748 -19.64513 -17.59013 -16.84842 -16.83634 -15.98979 -15.27818 -15.00461 -14.27868 -14.05571 -13.65101 -13.07713 -13.05602 -12.55703 -12.53285 -12.29499 -12.01947 -11.60884 -11.44339 -11.19829 -10.83437 -10.77473 -9.39482 -8.81898 -6.62829 1.01767 1.36390 1.55302 1.61539 2.10028 2.36672 2.64846 3.02104 3.04826 3.71370 3.96739 4.12371 4.17855 4.51077 4.75901 4.81058 4.86431 4.89804 5.04991 5.17704 5.29314 5.31185 5.41471 5.55664 6.14530 6.30723 6.45267 6.62529 7.65638 8.16661 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.088145 B = 0.008063 C = 0.007754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.581557 B = 3471.716081 C = 3610.057078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.026 3.974 3 Si 1.025 2.975 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.253 1.253 7 C -0.455 4.455 8 H 0.091 0.909 9 C 0.111 3.889 10 C -0.215 4.215 11 N -0.479 5.479 12 C 0.035 3.965 13 C 0.039 3.961 14 C -0.173 4.173 15 C -0.177 4.177 16 C -0.150 4.150 17 O -0.259 6.259 18 H 0.299 0.701 19 H 0.181 0.819 20 H 0.093 0.907 21 H 0.098 0.902 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -5.813 -1.686 6.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.189 4.189 3 Si 0.842 3.158 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.177 1.177 7 C -0.485 4.485 8 H 0.109 0.891 9 C 0.058 3.942 10 C -0.358 4.358 11 N -0.208 5.208 12 C -0.167 4.167 13 C 0.002 3.998 14 C -0.192 4.192 15 C -0.214 4.214 16 C -0.186 4.186 17 O -0.151 6.151 18 H 0.110 0.890 19 H 0.197 0.803 20 H 0.112 0.888 21 H 0.116 0.884 22 H 0.094 0.906 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.342 -6.046 -1.681 6.698 hybrid contribution 0.615 1.196 -0.062 1.347 sum 2.958 -4.850 -1.743 5.942 Atomic orbital electron populations 1.69636 1.09376 1.31452 1.33542 1.27099 0.95981 1.04820 0.91030 0.84582 0.78350 0.72912 0.79993 1.18020 1.18166 1.17685 1.18882 0.95511 0.87525 1.46540 0.89076 1.21218 0.93287 0.82651 0.97029 1.24027 0.95333 0.91391 1.25085 1.69541 1.28788 1.07023 1.15431 1.25946 0.80271 0.94990 1.15490 1.19293 1.03762 0.80632 0.96160 1.22127 1.06511 0.94204 0.96378 1.23117 0.92487 1.03229 1.02568 1.23114 0.98132 0.93044 1.04334 1.84312 1.38669 1.16715 1.75443 0.88979 0.80265 0.88849 0.88415 0.90610 0.88093 0.88713 0.87419 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.81 10.32 21.87 0.23 -42.58 15 2 C 0.03 1.31 5.50 85.32 0.47 1.78 15 3 Si 1.02 36.93 29.56 68.60 2.03 38.96 15 4 H -0.26 -8.78 7.11 99.48 0.71 -8.07 15 5 H -0.26 -8.60 7.11 99.48 0.71 -7.90 15 6 H -0.25 -8.81 7.11 99.48 0.71 -8.10 15 7 C -0.46 -25.67 9.45 23.13 0.22 -25.45 15 8 H 0.09 4.81 7.85 -2.91 -0.02 4.79 15 9 C 0.11 6.74 7.08 22.94 0.16 6.90 15 10 C -0.22 -13.25 10.89 84.75 0.92 -12.33 15 11 N -0.48 -27.63 11.23 -300.12 -3.37 -31.00 15 12 C 0.03 1.80 7.50 88.26 0.66 2.46 15 13 C 0.04 1.47 6.12 29.85 0.18 1.65 15 14 C -0.17 -5.68 5.72 -10.79 -0.06 -5.74 15 15 C -0.18 -4.74 10.18 30.62 0.31 -4.43 15 16 C -0.15 -3.41 10.26 30.62 0.31 -3.09 15 17 O -0.26 -14.91 10.81 -11.72 -0.13 -15.04 15 18 H 0.30 13.77 8.30 -92.70 -0.77 13.00 15 19 H 0.18 11.26 5.76 -2.91 -0.02 11.25 15 20 H 0.09 3.05 8.14 -2.39 -0.02 3.03 15 21 H 0.10 3.31 7.88 -2.39 -0.02 3.29 15 22 H 0.08 2.88 8.07 -2.39 -0.02 2.86 15 23 H 0.10 2.57 8.03 -2.39 -0.02 2.55 15 24 H 0.09 2.40 8.14 -2.38 -0.02 2.38 15 25 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 Total: -1.00 -67.75 234.39 3.12 -64.64 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 1.18 Total: 23.29 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.18 Total: -38.26 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -3.15 Total: -73.58 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.13 Total: -15.04 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -67.75 3.12 -64.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642886506.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.034 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds