Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48494 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46695 * 299.99405 * 3 2 1 6 6 H 1.48494 * 109.47363 * 59.99176 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 N 1.31803 * 119.11913 * 269.72300 * 12 11 10 14 14 C 1.32333 * 120.81208 * 179.75979 * 13 12 11 15 15 C 1.38592 * 119.11047 * 0.50927 * 14 13 12 16 16 C 1.38593 * 118.39674 * 359.74948 * 15 14 13 17 17 N 1.31797 * 119.12612 * 89.99824 * 12 11 10 18 18 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 20 20 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 21 21 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 22 22 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 23 23 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 24 24 H 1.08006 * 120.44382 * 180.23897 * 14 13 12 25 25 H 1.07997 * 120.80402 * 179.77456 * 15 14 13 26 26 H 1.08007 * 120.44813 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5148 -6.0260 0.0006 13 7 2.9411 -6.5058 -1.1506 14 6 3.8306 -7.4849 -1.1891 15 6 4.3052 -8.0119 0.0016 16 6 3.8294 -7.4848 1.1917 17 7 2.9437 -6.5023 1.1522 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5572 -0.8896 20 1 0.6240 -2.5568 0.8903 21 1 2.8405 -3.5487 0.7819 22 1 0.8801 -4.9818 0.8897 23 1 0.8807 -4.9813 -0.8902 24 1 4.1788 -7.8710 -2.1358 25 1 5.0287 -8.8137 0.0020 26 1 4.1771 -7.8703 2.1389 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702326498.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = 47.304764 kcal Electronic energy + Delta-G solvation = -11143.886126 eV Core-core repulsion = 9029.670633 eV Total energy + Delta-G solvation = -2114.215494 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.84253 -35.47592 -33.57266 -32.82180 -31.52663 -27.68058 -25.01510 -24.43042 -22.20216 -21.31728 -17.41962 -17.09498 -16.21694 -15.25713 -14.92954 -14.62624 -14.16433 -13.52705 -13.24463 -12.97940 -12.17631 -11.45098 -11.28730 -10.83770 -10.72442 -10.70907 -10.55217 -9.98785 -9.46891 -9.16169 -9.08988 -8.46952 -7.34069 -6.01531 -4.03187 0.97649 1.19881 3.33302 3.40182 3.45822 3.85168 4.12030 4.29024 4.46490 4.62206 5.00662 5.13745 5.34623 5.43936 5.55292 5.70636 6.09633 6.15616 6.50445 7.11918 7.21603 7.41128 7.78024 8.11239 8.27009 8.35811 8.57302 9.05312 9.61301 11.09731 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.076525 B = 0.006716 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.807706 B = 4168.368944 C = 4244.878363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.679 5.679 11 C 0.122 3.878 12 C 0.338 3.662 13 N -0.501 5.501 14 C 0.145 3.855 15 C -0.243 4.243 16 C 0.145 3.855 17 N -0.518 5.518 18 H 0.261 0.739 19 H 0.032 0.968 20 H -0.009 1.009 21 H 0.332 0.668 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.165 0.835 25 H 0.143 0.857 26 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -14.740 0.798 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.311 5.311 11 C -0.009 4.009 12 C 0.071 3.929 13 N -0.215 5.215 14 C -0.021 4.021 15 C -0.266 4.266 16 C -0.022 4.022 17 N -0.232 5.232 18 H 0.071 0.929 19 H 0.050 0.950 20 H 0.009 0.991 21 H 0.148 0.852 22 H 0.067 0.933 23 H 0.110 0.890 24 H 0.182 0.818 25 H 0.161 0.839 26 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.035 -13.855 0.105 15.113 hybrid contribution 0.836 0.062 0.900 1.230 sum 6.871 -13.793 1.005 15.443 Atomic orbital electron populations 1.69968 1.06058 1.26721 1.50939 1.24982 0.94898 0.99365 0.95324 0.86403 0.80044 0.83245 0.77487 1.19681 1.20967 1.21083 1.21189 0.93572 0.90083 1.50305 0.91914 1.19612 0.90497 0.86867 0.96176 1.60719 1.21237 1.00032 1.49117 1.20670 0.91612 0.86604 1.02016 1.23486 0.92990 0.93506 0.82954 1.68355 1.11793 1.10604 1.30759 1.23280 0.90210 0.90021 0.98614 1.22842 1.04317 1.04171 0.95221 1.23209 0.90193 0.90122 0.98628 1.68332 1.12375 1.11591 1.30935 0.92931 0.94976 0.99130 0.85202 0.93324 0.89021 0.81778 0.83906 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.29 55.43 0.74 -26.38 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 7 C -0.51 -14.90 9.32 -34.44 -0.32 -15.22 15 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 15 9 C 0.19 5.25 5.44 -4.97 -0.03 5.22 15 10 N -0.68 -15.62 6.48 -116.34 -0.75 -16.37 15 11 C 0.12 2.39 6.12 -4.98 -0.03 2.36 15 12 C 0.34 6.01 7.15 -157.19 -1.12 4.89 15 13 N -0.50 -8.40 10.34 -10.72 -0.11 -8.51 15 14 C 0.15 1.79 11.30 -17.21 -0.19 1.60 15 15 C -0.24 -2.50 10.17 -39.32 -0.40 -2.90 15 16 C 0.14 1.74 11.30 -17.20 -0.19 1.55 15 17 N -0.52 -8.40 10.34 -10.72 -0.11 -8.51 15 18 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 19 H 0.03 0.92 8.14 -51.93 -0.42 0.50 15 20 H -0.01 -0.26 8.14 -51.93 -0.42 -0.68 15 21 H 0.33 7.48 8.72 -39.29 -0.34 7.14 15 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.09 1.78 8.14 -51.93 -0.42 1.36 15 24 H 0.17 1.41 8.06 -52.48 -0.42 0.99 15 25 H 0.14 0.91 8.06 -52.49 -0.42 0.49 15 26 H 0.16 1.35 8.06 -52.48 -0.42 0.93 15 LS Contribution 239.14 15.07 3.60 3.60 Total: -1.00 -32.62 239.14 -6.89 -39.51 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.85 Total: 0.62 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.39 Total: -0.99 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.24 Total: -59.77 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.62 -6.89 -39.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702326498.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.817 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds