Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48494 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46695 * 299.99405 * 3 2 1 6 6 H 1.48494 * 109.47363 * 59.99176 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46943 * 180.02562 * 11 10 9 13 13 N 1.31803 * 119.11913 * 269.72300 * 12 11 10 14 14 C 1.32333 * 120.81208 * 179.75979 * 13 12 11 15 15 C 1.38592 * 119.11047 * 0.50927 * 14 13 12 16 16 C 1.38593 * 118.39674 * 359.74948 * 15 14 13 17 17 N 1.31797 * 119.12612 * 89.99824 * 12 11 10 18 18 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 20 20 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 21 21 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 22 22 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 23 23 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 24 24 H 1.08006 * 120.44382 * 180.23897 * 14 13 12 25 25 H 1.07997 * 120.80402 * 179.77456 * 15 14 13 26 26 H 1.08007 * 120.44813 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 6 2.5148 -6.0260 0.0006 13 7 2.9411 -6.5058 -1.1506 14 6 3.8306 -7.4849 -1.1891 15 6 4.3052 -8.0119 0.0016 16 6 3.8294 -7.4848 1.1917 17 7 2.9437 -6.5023 1.1522 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5572 -0.8896 20 1 0.6240 -2.5568 0.8903 21 1 2.8405 -3.5487 0.7819 22 1 0.8801 -4.9818 0.8897 23 1 0.8807 -4.9813 -0.8902 24 1 4.1788 -7.8710 -2.1358 25 1 5.0287 -8.8137 0.0020 26 1 4.1771 -7.8703 2.1389 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702326498.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = 22.438862 kcal Electronic energy + Delta-G solvation = -11144.964393 eV Core-core repulsion = 9029.670633 eV Total energy + Delta-G solvation = -2115.293760 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.91981 -37.27331 -34.77565 -34.65265 -32.95336 -29.50523 -26.77042 -25.42220 -23.82890 -23.07382 -18.83865 -18.50306 -17.72665 -16.76834 -16.36366 -16.12097 -15.77847 -14.86455 -14.74274 -14.36651 -14.03375 -13.34136 -13.15314 -12.66347 -12.64802 -12.11654 -11.85242 -11.71186 -11.32957 -10.68748 -10.47573 -10.17405 -9.25156 -8.23798 -6.35245 -0.06884 0.23217 1.41241 1.42287 1.56378 2.39331 2.73349 2.95437 3.09515 3.29055 3.74012 3.80613 4.13771 4.26871 4.43349 4.45429 4.67446 4.92739 5.04184 5.20894 5.48585 5.57455 5.96149 6.12429 6.32942 6.56966 6.82120 7.18393 7.35040 8.88275 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.076525 B = 0.006716 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.807706 B = 4168.368944 C = 4244.878363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.678 5.678 11 C 0.127 3.873 12 C 0.312 3.688 13 N -0.535 5.535 14 C 0.131 3.869 15 C -0.212 4.212 16 C 0.132 3.868 17 N -0.543 5.543 18 H 0.267 0.733 19 H 0.007 0.993 20 H -0.031 1.031 21 H 0.333 0.667 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.201 0.799 25 H 0.194 0.806 26 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.990 -15.781 0.936 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.310 5.310 11 C -0.004 4.004 12 C 0.044 3.956 13 N -0.249 5.249 14 C -0.034 4.034 15 C -0.234 4.234 16 C -0.033 4.033 17 N -0.259 5.259 18 H 0.076 0.924 19 H 0.025 0.975 20 H -0.014 1.014 21 H 0.150 0.850 22 H 0.064 0.936 23 H 0.102 0.898 24 H 0.218 0.782 25 H 0.211 0.789 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 8.237 -14.936 0.243 17.059 hybrid contribution 0.213 0.203 0.857 0.906 sum 8.451 -14.733 1.100 17.020 Atomic orbital electron populations 1.70088 1.07756 1.28101 1.51247 1.25961 0.95858 1.03392 0.94401 0.85225 0.78752 0.78035 0.77896 1.18873 1.20174 1.20054 1.21503 0.93701 0.91312 1.51043 0.92019 1.19264 0.90486 0.88214 0.93841 1.60556 1.20620 1.00612 1.49170 1.20516 0.92393 0.86076 1.01447 1.22797 0.94330 0.94305 0.84186 1.68246 1.13568 1.12564 1.30570 1.24001 0.89189 0.88977 1.01235 1.23355 1.03013 1.03548 0.93462 1.23971 0.89085 0.88987 1.01210 1.68243 1.13922 1.13339 1.30371 0.92449 0.97508 1.01370 0.85012 0.93579 0.89844 0.78239 0.78890 0.78049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.99 15 2 C 0.00 0.13 5.46 84.66 0.46 0.60 15 3 Si 0.98 45.27 29.54 68.60 2.03 47.30 15 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 7 C -0.54 -31.90 9.32 25.60 0.24 -31.66 15 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 15 9 C 0.21 11.81 5.44 85.55 0.47 12.27 15 10 N -0.68 -32.41 6.48 -521.98 -3.38 -35.79 15 11 C 0.13 5.20 6.12 85.56 0.52 5.72 15 12 C 0.31 11.19 7.15 138.75 0.99 12.18 15 13 N -0.53 -17.63 10.34 -187.84 -1.94 -19.57 15 14 C 0.13 2.86 11.30 84.70 0.96 3.81 15 15 C -0.21 -3.46 10.17 22.44 0.23 -3.23 15 16 C 0.13 2.78 11.30 84.70 0.96 3.74 15 17 N -0.54 -17.22 10.34 -187.84 -1.94 -19.16 15 18 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 19 H 0.01 0.41 8.14 -2.39 -0.02 0.39 15 20 H -0.03 -1.87 8.14 -2.39 -0.02 -1.89 15 21 H 0.33 15.55 8.72 -89.69 -0.78 14.76 15 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.08 3.46 8.14 -2.39 -0.02 3.44 15 24 H 0.20 2.69 8.06 -2.91 -0.02 2.67 15 25 H 0.19 1.20 8.06 -2.91 -0.02 1.17 15 26 H 0.20 2.49 8.06 -2.91 -0.02 2.47 15 Total: -1.00 -72.52 239.14 0.27 -72.25 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.40 Total: 8.51 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 4.83 Total: 3.44 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -6.98 Total: -131.50 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.52 0.27 -72.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702326498.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.690 kcal (2) G-P(sol) polarization free energy of solvation -72.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds