Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50707 * 109.46902 * 293.28263 * 3 2 1 5 5 O 1.21286 * 119.99966 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99898 * 180.02562 * 4 3 2 7 7 C 1.37086 * 120.00100 * 180.02562 * 6 4 3 8 8 H 1.08001 * 119.99840 * 223.70764 * 7 6 4 9 9 C 1.38954 * 120.00223 * 43.70752 * 7 6 4 10 10 N 1.31406 * 119.99735 * 22.91372 * 9 7 6 11 11 Si 1.86799 * 119.99898 * 202.91352 * 9 7 6 12 12 H 1.48501 * 109.47233 * 269.99874 * 11 9 7 13 13 H 1.48505 * 109.47361 * 30.00238 * 11 9 7 14 14 H 1.48503 * 109.46837 * 149.99934 * 11 9 7 15 15 C 1.46508 * 119.99637 * 359.97438 * 6 4 3 16 16 C 1.53002 * 117.49453 * 186.33934 * 15 6 4 17 17 C 1.53004 * 60.00148 * 252.51359 * 16 15 6 18 18 H 4.43227 * 5.59271 * 179.97438 * 4 1 2 19 19 H 1.08998 * 109.46996 * 173.28176 * 3 2 1 20 20 H 1.08996 * 109.46947 * 53.27841 * 3 2 1 21 21 H 0.97003 * 120.00329 * 6.07332 * 10 9 7 22 22 H 1.08999 * 115.55190 * 332.04897 * 15 6 4 23 23 H 1.08996 * 117.49764 * 0.02562 * 16 15 6 24 24 H 1.08999 * 117.49659 * 145.02224 * 16 15 6 25 25 H 1.08998 * 117.50051 * 252.51877 * 17 16 15 26 26 H 1.09000 * 117.51908 * 107.48332 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1485 -0.5608 1.3052 5 8 2.3605 -0.9250 2.1521 6 7 4.4737 -0.6570 1.5316 7 6 4.9308 -1.1682 2.7186 8 1 5.7477 -0.6862 3.2352 9 6 4.3432 -2.3064 3.2573 10 7 3.6947 -3.1424 2.4780 11 14 4.4752 -2.6479 5.0890 12 1 5.6941 -3.4531 5.3559 13 1 4.5597 -1.3622 5.8275 14 1 3.2767 -3.3999 5.5399 15 6 5.4255 -0.2164 0.5087 16 6 6.9099 -0.4871 0.7617 17 6 6.3634 0.9381 0.8670 18 1 -1.0500 0.0001 0.0002 19 1 3.0088 1.0214 -0.1202 20 1 3.0095 -0.6136 -0.8237 21 1 3.7004 -3.0131 1.5167 22 1 5.0709 -0.2760 -0.5203 23 1 7.1783 -0.9933 1.6889 24 1 7.5323 -0.7250 -0.1010 25 1 6.6261 1.6378 0.0736 26 1 6.2721 1.3701 1.8636 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706785710.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = 30.867987 kcal Electronic energy + Delta-G solvation = -11939.306185 eV Core-core repulsion = 9792.085189 eV Total energy + Delta-G solvation = -2147.220997 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.71600 -37.98934 -35.28308 -34.42453 -32.82906 -30.04472 -26.45651 -23.29343 -22.98924 -21.73671 -19.09858 -18.57920 -18.09573 -16.67666 -16.29316 -15.62966 -15.44742 -14.80926 -14.70691 -14.29391 -13.33220 -13.21540 -12.67859 -12.29302 -12.02970 -11.90303 -11.82439 -11.44710 -11.32059 -11.13382 -10.68160 -10.08717 -9.34898 -8.57455 -6.08792 1.46207 1.59079 1.74866 1.78301 1.86602 2.08676 2.47953 2.99771 3.07788 3.31794 3.52490 4.00714 4.09364 4.19982 4.32718 4.43907 4.56876 4.84576 4.92737 5.09020 5.22693 5.42623 5.72948 6.15556 6.69001 6.83993 7.12428 7.49073 8.09277 8.68202 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.026823 B = 0.017699 C = 0.011594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.642156 B = 1581.659298 C = 2414.369403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C -0.017 4.017 4 C 0.448 3.552 5 O -0.592 6.592 6 N -0.446 5.446 7 C -0.434 4.434 8 H 0.069 0.931 9 C -0.011 4.011 10 N -0.879 5.879 11 Si 1.116 2.884 12 H -0.260 1.260 13 H -0.276 1.276 14 H -0.293 1.293 15 C 0.034 3.966 16 C -0.171 4.171 17 C -0.176 4.176 18 H 0.252 0.748 19 H 0.131 0.869 20 H 0.121 0.879 21 H 0.254 0.746 22 H 0.139 0.861 23 H 0.077 0.923 24 H 0.122 0.878 25 H 0.130 0.870 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 6.910 -6.663 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.210 4.210 3 C -0.056 4.056 4 C 0.237 3.763 5 O -0.474 6.474 6 N -0.167 5.167 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.217 4.217 10 N -0.512 5.512 11 Si 0.938 3.062 12 H -0.185 1.185 13 H -0.202 1.202 14 H -0.220 1.220 15 C -0.070 4.070 16 C -0.208 4.208 17 C -0.215 4.215 18 H 0.269 0.731 19 H 0.149 0.851 20 H 0.139 0.861 21 H 0.064 0.936 22 H 0.157 0.843 23 H 0.095 0.905 24 H 0.140 0.860 25 H 0.148 0.852 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.520 5.694 -5.062 8.025 hybrid contribution 0.239 0.826 -1.106 1.401 sum 2.759 6.520 -6.168 9.390 Atomic orbital electron populations 1.25637 0.96746 0.99883 0.99312 1.22960 0.94951 1.01560 1.01481 1.18665 0.86252 1.04408 0.96254 1.20919 0.83004 0.82512 0.89823 1.90576 1.55691 1.52196 1.48969 1.43189 1.03205 1.55678 1.14598 1.19928 1.23426 1.12188 1.00583 0.91291 1.27489 0.93191 0.91281 1.09735 1.70657 1.39569 1.35464 1.05493 0.82952 0.76973 0.76336 0.69972 1.18490 1.20159 1.21973 1.22230 0.88212 1.03659 0.92914 1.23132 0.94945 0.99014 1.03729 1.23303 1.03616 0.91614 1.02927 0.73136 0.85112 0.86149 0.93605 0.84341 0.90453 0.86031 0.85162 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.91 19.25 74.32 1.43 -5.48 15 2 C -0.21 -8.34 12.58 31.12 0.39 -7.95 15 3 C -0.02 -0.63 4.77 28.04 0.13 -0.50 15 4 C 0.45 23.24 6.42 87.66 0.56 23.80 15 5 O -0.59 -37.32 13.91 -3.05 -0.04 -37.37 15 6 N -0.45 -22.32 2.60 -613.10 -1.59 -23.91 15 7 C -0.43 -24.48 7.78 84.04 0.65 -23.83 15 8 H 0.07 3.80 7.41 -2.91 -0.02 3.78 15 9 C -0.01 -0.65 4.22 84.93 0.36 -0.29 15 10 N -0.88 -56.12 12.37 21.66 0.27 -55.85 15 11 Si 1.12 53.37 29.98 68.60 2.06 55.42 15 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 14 H -0.29 -14.53 7.11 99.48 0.71 -13.83 15 15 C 0.03 1.26 5.95 44.99 0.27 1.52 15 16 C -0.17 -5.67 9.80 30.60 0.30 -5.37 15 17 C -0.18 -5.37 10.31 30.60 0.32 -5.06 15 18 H 0.25 6.10 7.80 -4.42 -0.03 6.07 15 19 H 0.13 4.02 8.11 -2.39 -0.02 4.00 15 20 H 0.12 3.90 7.57 -2.39 -0.02 3.88 15 21 H 0.25 16.47 7.42 -92.71 -0.69 15.78 15 22 H 0.14 4.10 6.86 -2.39 -0.02 4.08 15 23 H 0.08 3.07 6.80 -2.39 -0.02 3.06 15 24 H 0.12 3.13 8.14 -2.39 -0.02 3.11 15 25 H 0.13 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.07 2.48 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -78.17 237.65 6.35 -71.82 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.25 Total: 13.04 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.41 Total: -23.14 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.32 Total: -79.77 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.04 Total: -37.37 kcal Atomic # 14 Polarization: 53.37 SS G_CDS: 2.06 Total: 55.42 kcal Total: -78.17 6.35 -71.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706785710.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.684 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds