Wall clock time and date at job start Mon Mar 30 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09004 * 109.87599 * 238.24424 * 3 2 1 5 5 C 1.54325 * 109.88169 * 117.22885 * 3 2 1 6 6 C 1.55157 * 102.94374 * 218.38862 * 5 3 2 7 7 C 1.54918 * 101.58155 * 35.49936 * 6 5 3 8 8 N 1.47015 * 109.88470 * 359.42028 * 3 2 1 9 9 C 1.34778 * 125.65008 * 298.33879 * 8 3 2 10 10 O 1.21689 * 119.99767 * 359.97438 * 9 8 3 11 11 C 1.46372 * 120.00472 * 179.97438 * 9 8 3 12 12 H 1.08000 * 119.99638 * 0.02562 * 11 9 8 13 13 C 1.40048 * 120.00052 * 179.97438 * 11 9 8 14 14 N 1.30665 * 120.00351 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47294 * 59.99911 * 15 13 11 17 17 H 1.48493 * 109.47332 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47384 * 300.00431 * 15 13 11 19 19 H 4.19383 * 14.94039 * 359.97438 * 4 2 1 20 20 H 1.08996 * 110.72124 * 100.02961 * 5 3 2 21 21 H 1.08999 * 110.87305 * 336.82389 * 5 3 2 22 22 H 1.09001 * 111.00846 * 153.57645 * 6 5 3 23 23 H 1.09000 * 111.00346 * 277.43176 * 6 5 3 24 24 H 1.08999 * 110.35942 * 81.82689 * 7 6 5 25 25 H 1.08996 * 110.36556 * 204.15522 * 7 6 5 26 26 H 0.97000 * 120.00541 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0163 0.5403 0.8716 5 6 3.1705 0.6649 -1.2904 6 6 4.4037 -0.2044 -1.6523 7 6 3.9313 -1.6127 -1.2125 8 7 3.1466 -1.3815 0.0140 9 6 2.9253 -2.2874 0.9871 10 8 2.2600 -1.9848 1.9601 11 6 3.4852 -3.6350 0.8738 12 1 4.0760 -3.9034 0.0105 13 6 3.2556 -4.5760 1.8853 14 7 2.5413 -4.2512 2.9300 15 14 3.9695 -6.2961 1.7403 16 1 5.4499 -6.2124 1.6574 17 1 3.5843 -7.0941 2.9319 18 1 3.4415 -6.9497 0.5157 19 1 -1.0500 0.0001 -0.0007 20 1 3.4682 1.6960 -1.0999 21 1 2.4221 0.6210 -2.0817 22 1 4.6013 -0.1755 -2.7239 23 1 5.2813 0.1077 -1.0862 24 1 3.3055 -2.0610 -1.9843 25 1 4.7887 -2.2511 -0.9997 26 1 2.3826 -4.9028 3.6308 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885269511.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:55 Heat of formation + Delta-G solvation = 18.344005 kcal Electronic energy + Delta-G solvation = -11812.984449 eV Core-core repulsion = 9665.220371 eV Total energy + Delta-G solvation = -2147.764077 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.61328 -35.66775 -32.55854 -32.28166 -30.38303 -28.18010 -26.11782 -22.81187 -20.83725 -19.76853 -17.48982 -16.44010 -15.74110 -15.30166 -14.29988 -13.79791 -13.09369 -12.88805 -12.63672 -12.01571 -11.56010 -11.41768 -11.22601 -10.91371 -10.77587 -10.48598 -10.27955 -10.22907 -9.70027 -9.47968 -8.84446 -7.60437 -7.29992 -6.19121 -4.64655 3.15825 3.20011 3.22067 3.41222 3.54754 4.11541 4.54641 4.75986 4.91084 5.09427 5.25052 5.44163 5.80225 5.82331 5.96132 6.07037 6.18454 6.43346 6.48310 6.63073 6.71899 7.34740 7.43624 8.09358 8.34532 8.39697 9.01526 9.48386 10.58229 10.76928 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.045704 B = 0.012130 C = 0.010191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.487391 B = 2307.778114 C = 2746.942302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.160 4.160 3 C 0.244 3.756 4 H 0.079 0.921 5 C -0.120 4.120 6 C -0.135 4.135 7 C 0.116 3.884 8 N -0.637 5.637 9 C 0.570 3.430 10 O -0.568 6.568 11 C -0.538 4.538 12 H 0.070 0.930 13 C 0.086 3.914 14 N -0.768 5.768 15 Si 0.910 3.090 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.268 1.268 19 H 0.209 0.791 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 5.072 -8.317 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.161 4.161 3 C 0.139 3.861 4 H 0.097 0.903 5 C -0.158 4.158 6 C -0.173 4.173 7 C -0.008 4.008 8 N -0.377 5.377 9 C 0.377 3.623 10 O -0.449 6.449 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.133 4.133 14 N -0.396 5.396 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.193 1.193 19 H 0.226 0.774 20 H 0.094 0.906 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.327 5.096 -7.497 9.359 hybrid contribution 0.050 -0.894 -0.091 0.900 sum 2.377 4.202 -7.589 8.994 Atomic orbital electron populations 1.24641 0.95687 1.01467 1.02803 1.23646 0.94823 0.99176 0.98503 1.18173 0.83219 0.87114 0.97564 0.90343 1.22602 0.97756 0.98875 0.96544 1.22827 0.97551 0.96016 1.00890 1.21938 0.95433 0.95533 0.87891 1.48972 1.55833 1.10465 1.22459 1.18096 0.80365 0.83965 0.79884 1.90624 1.43345 1.79404 1.31520 1.20847 1.34963 0.94684 1.07023 0.91212 1.25735 0.93533 0.99815 0.94265 1.70011 1.28842 1.34458 1.06337 0.86406 0.79949 0.81935 0.78313 1.19201 1.20516 1.19256 0.77359 0.90607 0.90928 0.90734 0.90868 0.93465 0.90798 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.54 19.25 29.55 0.57 -3.97 15 2 C -0.16 -3.50 11.97 -37.12 -0.44 -3.94 15 3 C 0.24 5.05 3.31 -69.74 -0.23 4.82 15 4 H 0.08 1.67 8.14 -51.93 -0.42 1.24 15 5 C -0.12 -1.79 6.45 -24.90 -0.16 -1.95 15 6 C -0.13 -1.90 7.09 -24.58 -0.17 -2.07 15 7 C 0.12 2.17 6.52 -2.52 -0.02 2.16 15 8 N -0.64 -15.27 3.04 -167.84 -0.51 -15.78 15 9 C 0.57 16.92 7.56 -12.99 -0.10 16.82 15 10 O -0.57 -19.10 14.85 5.20 0.08 -19.02 15 11 C -0.54 -15.53 8.98 -35.63 -0.32 -15.85 15 12 H 0.07 1.83 6.64 -52.49 -0.35 1.48 15 13 C 0.09 2.45 5.50 -17.37 -0.10 2.35 15 14 N -0.77 -23.45 11.83 55.55 0.66 -22.79 15 15 Si 0.91 20.35 29.56 -169.99 -5.02 15.33 15 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 19 H 0.21 3.26 7.80 -54.09 -0.42 2.83 15 20 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.07 1.04 7.84 -51.93 -0.41 0.63 15 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.07 1.38 7.14 -51.93 -0.37 1.01 15 26 H 0.27 7.46 8.29 -40.82 -0.34 7.12 15 LS Contribution 235.65 15.07 3.55 3.55 Total: -1.00 -35.60 235.65 -5.02 -40.62 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -2.80 Total: -0.27 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.97 Total: -1.64 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.15 Total: -38.57 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.08 Total: -19.02 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -35.60 -5.02 -40.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885269511.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.965 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds