Wall clock time and date at job start Mon Mar 30 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.08997 * 109.99843 * 12.21276 * 3 2 1 5 5 C 1.54322 * 109.87956 * 133.31313 * 3 2 1 6 6 C 1.55153 * 102.94269 * 141.61107 * 5 3 2 7 7 C 1.54917 * 101.57995 * 324.49512 * 6 5 3 8 8 N 1.47020 * 109.87979 * 251.11851 * 3 2 1 9 9 C 1.34777 * 125.65143 * 61.67685 * 8 3 2 10 10 O 1.21690 * 119.99870 * 359.97438 * 9 8 3 11 11 C 1.46371 * 120.00018 * 179.97438 * 9 8 3 12 12 H 1.07997 * 120.00240 * 0.02562 * 11 9 8 13 13 C 1.40052 * 119.99675 * 180.02562 * 11 9 8 14 14 N 1.30674 * 120.00265 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 119.99837 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47005 * 90.00347 * 15 13 11 17 17 H 1.48496 * 109.47267 * 210.00212 * 15 13 11 18 18 H 1.48497 * 109.47379 * 330.00154 * 15 13 11 19 19 H 4.19573 * 14.90992 * 359.97438 * 4 2 1 20 20 H 1.08997 * 110.72456 * 23.24346 * 5 3 2 21 21 H 1.09004 * 110.87111 * 260.03931 * 5 3 2 22 22 H 1.09005 * 111.00422 * 206.42378 * 6 5 3 23 23 H 1.08998 * 111.00786 * 82.56908 * 6 5 3 24 24 H 1.08998 * 110.36726 * 155.84993 * 7 6 5 25 25 H 1.09005 * 110.36534 * 278.17514 * 7 6 5 26 26 H 0.97000 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0193 -1.0002 -0.2167 5 6 3.1704 0.9964 -1.0560 6 6 4.4029 1.6279 -0.3563 7 6 3.9297 1.6822 1.1178 8 7 3.1458 0.4483 1.3082 9 6 2.9246 -0.1677 2.4863 10 8 2.2594 -1.1860 2.5250 11 6 3.4844 0.3880 3.7193 12 1 4.0745 1.2919 3.6850 13 6 3.2550 -0.2525 4.9434 14 7 2.5415 -1.3465 4.9848 15 14 3.9688 0.4571 6.5171 16 1 2.9983 1.4083 7.1160 17 1 4.2409 -0.6426 7.4771 18 1 5.2347 1.1698 6.2091 19 1 -1.0499 -0.0011 0.0003 20 1 2.4204 1.7562 -1.2757 21 1 3.4684 0.4761 -1.9663 22 1 4.6000 2.6288 -0.7405 23 1 5.2810 0.9908 -0.4616 24 1 4.7868 1.6949 1.7911 25 1 3.3034 2.5589 1.2831 26 1 2.3829 -1.7902 5.8327 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885269513.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:57 Heat of formation + Delta-G solvation = 18.326789 kcal Electronic energy + Delta-G solvation = -11813.234583 eV Core-core repulsion = 9665.469759 eV Total energy + Delta-G solvation = -2147.764824 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.61439 -35.66843 -32.55819 -32.28103 -30.38326 -28.17980 -26.11870 -22.81169 -20.83754 -19.76828 -17.49238 -16.44066 -15.74283 -15.30366 -14.29315 -13.79992 -13.09475 -12.88931 -12.63731 -12.02105 -11.56083 -11.42185 -11.21008 -10.93436 -10.77585 -10.48495 -10.27267 -10.21307 -9.70012 -9.48070 -8.85191 -7.60319 -7.30005 -6.19410 -4.64702 3.14073 3.20118 3.23730 3.41128 3.54633 4.11445 4.54517 4.75956 4.90995 5.09273 5.25304 5.44134 5.80117 5.82534 5.96096 6.07023 6.18432 6.43486 6.48217 6.63066 6.71964 7.34720 7.43684 8.09459 8.34475 8.39814 9.01537 9.48316 10.58027 10.76784 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.045707 B = 0.012130 C = 0.010191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.456665 B = 2307.766372 C = 2746.973721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.160 4.160 3 C 0.244 3.756 4 H 0.079 0.921 5 C -0.120 4.120 6 C -0.135 4.135 7 C 0.116 3.884 8 N -0.637 5.637 9 C 0.570 3.430 10 O -0.568 6.568 11 C -0.538 4.538 12 H 0.070 0.930 13 C 0.086 3.914 14 N -0.768 5.768 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 H 0.209 0.791 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 6.163 -7.558 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.161 4.161 3 C 0.139 3.861 4 H 0.097 0.903 5 C -0.158 4.158 6 C -0.173 4.173 7 C -0.008 4.008 8 N -0.377 5.377 9 C 0.377 3.623 10 O -0.449 6.449 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.396 5.396 15 Si 0.734 3.266 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.188 1.188 19 H 0.226 0.774 20 H 0.091 0.909 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.335 5.383 -7.310 9.374 hybrid contribution 0.037 0.379 0.817 0.902 sum 2.372 5.762 -6.493 8.999 Atomic orbital electron populations 1.24639 0.95686 1.02576 1.01689 1.23642 0.94814 0.98695 0.98982 1.18172 0.83221 0.98241 0.86444 0.90340 1.22602 0.97755 0.98314 0.97112 1.22826 0.97555 1.00756 0.96145 1.21939 0.95444 0.88584 0.94835 1.48977 1.55880 1.27650 1.05232 1.18105 0.80356 0.83206 0.80664 1.90625 1.43332 1.26105 1.84825 1.20883 1.34936 1.11668 0.89990 0.91163 1.25743 0.93544 0.93965 1.00123 1.70028 1.28963 1.14243 1.26400 0.86344 0.79922 0.79127 0.81217 1.19721 1.20412 1.18833 0.77358 0.90946 0.90586 0.90735 0.90866 0.90793 0.93468 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.54 19.25 29.55 0.57 -3.97 15 2 C -0.16 -3.50 11.96 -37.12 -0.44 -3.94 15 3 C 0.24 5.05 3.31 -69.74 -0.23 4.82 15 4 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 5 C -0.12 -1.79 6.45 -24.90 -0.16 -1.95 15 6 C -0.13 -1.90 7.09 -24.58 -0.17 -2.07 15 7 C 0.12 2.17 6.52 -2.53 -0.02 2.16 15 8 N -0.64 -15.27 3.04 -167.84 -0.51 -15.78 15 9 C 0.57 16.91 7.56 -12.99 -0.10 16.82 15 10 O -0.57 -19.09 14.84 5.20 0.08 -19.02 15 11 C -0.54 -15.52 8.98 -35.63 -0.32 -15.84 15 12 H 0.07 1.85 6.64 -52.49 -0.35 1.50 15 13 C 0.09 2.44 5.50 -17.36 -0.10 2.34 15 14 N -0.77 -23.44 11.83 55.55 0.66 -22.78 15 15 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 15 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 18 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 19 H 0.21 3.26 7.80 -54.09 -0.42 2.83 15 20 H 0.07 1.04 7.83 -51.93 -0.41 0.63 15 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.07 1.38 7.14 -51.93 -0.37 1.01 15 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.27 7.42 8.29 -40.82 -0.34 7.08 15 LS Contribution 235.65 15.07 3.55 3.55 Total: -1.00 -35.62 235.65 -5.02 -40.64 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -2.80 Total: -0.29 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.97 Total: -1.64 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.15 Total: -38.56 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.08 Total: -19.02 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -35.62 -5.02 -40.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885269513.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.964 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds