Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.08997 * 109.99843 * 12.21276 * 3 2 1 5 5 C 1.54322 * 109.87956 * 133.31313 * 3 2 1 6 6 C 1.55153 * 102.94269 * 141.61107 * 5 3 2 7 7 C 1.54917 * 101.57995 * 324.49512 * 6 5 3 8 8 N 1.47020 * 109.87979 * 251.11851 * 3 2 1 9 9 C 1.34777 * 125.65143 * 61.67685 * 8 3 2 10 10 O 1.21690 * 119.99870 * 359.97438 * 9 8 3 11 11 C 1.46371 * 120.00018 * 179.97438 * 9 8 3 12 12 H 1.07997 * 120.00240 * 0.02562 * 11 9 8 13 13 C 1.40052 * 119.99675 * 180.02562 * 11 9 8 14 14 N 1.30674 * 120.00265 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 119.99837 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47005 * 90.00347 * 15 13 11 17 17 H 1.48496 * 109.47267 * 210.00212 * 15 13 11 18 18 H 1.48497 * 109.47379 * 330.00154 * 15 13 11 19 19 H 4.19573 * 14.90992 * 359.97438 * 4 2 1 20 20 H 1.08997 * 110.72456 * 23.24346 * 5 3 2 21 21 H 1.09004 * 110.87111 * 260.03931 * 5 3 2 22 22 H 1.09005 * 111.00422 * 206.42378 * 6 5 3 23 23 H 1.08998 * 111.00786 * 82.56908 * 6 5 3 24 24 H 1.08998 * 110.36726 * 155.84993 * 7 6 5 25 25 H 1.09005 * 110.36534 * 278.17514 * 7 6 5 26 26 H 0.97000 * 119.99661 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0193 -1.0002 -0.2167 5 6 3.1704 0.9964 -1.0560 6 6 4.4029 1.6279 -0.3563 7 6 3.9297 1.6822 1.1178 8 7 3.1458 0.4483 1.3082 9 6 2.9246 -0.1677 2.4863 10 8 2.2594 -1.1860 2.5250 11 6 3.4844 0.3880 3.7193 12 1 4.0745 1.2919 3.6850 13 6 3.2550 -0.2525 4.9434 14 7 2.5415 -1.3465 4.9848 15 14 3.9688 0.4571 6.5171 16 1 2.9983 1.4083 7.1160 17 1 4.2409 -0.6426 7.4771 18 1 5.2347 1.1698 6.2091 19 1 -1.0499 -0.0011 0.0003 20 1 2.4204 1.7562 -1.2757 21 1 3.4684 0.4761 -1.9663 22 1 4.6000 2.6288 -0.7405 23 1 5.2810 0.9908 -0.4616 24 1 4.7868 1.6949 1.7911 25 1 3.3034 2.5589 1.2831 26 1 2.3829 -1.7902 5.8327 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885269513.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = -7.003356 kcal Electronic energy + Delta-G solvation = -11814.332981 eV Core-core repulsion = 9665.469759 eV Total energy + Delta-G solvation = -2148.863221 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.33262 -37.69199 -34.68489 -33.92699 -32.08065 -29.72508 -28.19732 -24.51289 -22.14279 -21.66698 -19.21666 -18.27910 -17.72155 -16.97113 -16.13249 -15.54354 -14.66551 -14.60054 -14.18564 -13.88215 -13.22237 -13.12991 -12.88964 -12.72950 -12.54221 -12.04333 -11.89821 -11.66622 -11.36401 -11.07215 -10.94562 -9.85862 -9.22521 -8.32111 -6.88803 1.37616 1.39959 1.55373 1.75200 1.92517 2.24201 2.42859 3.03947 3.41225 3.63597 3.80296 3.96425 4.21662 4.41478 4.67215 4.89231 4.94791 5.03887 5.11550 5.20436 5.30400 5.39151 5.62138 6.01160 6.36555 6.73811 6.83287 7.44772 8.43309 8.64278 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.045707 B = 0.012130 C = 0.010191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.456665 B = 2307.766372 C = 2746.973721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.211 4.211 3 C 0.229 3.771 4 H 0.059 0.941 5 C -0.104 4.104 6 C -0.116 4.116 7 C 0.104 3.896 8 N -0.647 5.647 9 C 0.550 3.450 10 O -0.626 6.626 11 C -0.565 4.565 12 H 0.089 0.911 13 C 0.026 3.974 14 N -0.823 5.823 15 Si 1.001 2.999 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.245 1.245 19 H 0.246 0.754 20 H 0.082 0.918 21 H 0.108 0.892 22 H 0.117 0.883 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.844 8.273 -7.973 12.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.212 4.212 3 C 0.125 3.875 4 H 0.077 0.923 5 C -0.142 4.142 6 C -0.154 4.154 7 C -0.019 4.019 8 N -0.384 5.384 9 C 0.357 3.643 10 O -0.513 6.513 11 C -0.601 4.601 12 H 0.107 0.893 13 C -0.189 4.189 14 N -0.453 5.453 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.196 1.196 18 H -0.168 1.168 19 H 0.262 0.738 20 H 0.101 0.899 21 H 0.126 0.874 22 H 0.135 0.865 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.432 7.545 -7.788 11.374 hybrid contribution -0.358 -0.287 0.863 0.977 sum 3.074 7.258 -6.925 10.493 Atomic orbital electron populations 1.25628 0.96826 1.00992 0.99965 1.24254 0.96048 1.00306 1.00635 1.18549 0.83211 0.99162 0.86595 0.92278 1.22609 0.98032 0.97244 0.96322 1.22815 0.97107 1.03300 0.92194 1.22258 0.94801 0.86434 0.98358 1.48775 1.55809 1.28748 1.05117 1.18497 0.80036 0.82965 0.82786 1.90557 1.45714 1.28541 1.86449 1.21413 1.35467 1.12563 0.90692 0.89280 1.27069 0.93329 0.93925 1.04580 1.70209 1.30786 1.16318 1.27977 0.84978 0.79592 0.78409 0.75065 1.18635 1.19640 1.16843 0.73785 0.89928 0.87395 0.86499 0.89994 0.91218 0.92953 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.55 19.25 74.32 1.43 -7.12 15 2 C -0.21 -9.33 11.96 31.13 0.37 -8.96 15 3 C 0.23 9.55 3.31 43.54 0.14 9.69 15 4 H 0.06 2.62 8.14 -2.39 -0.02 2.60 15 5 C -0.10 -2.84 6.45 31.78 0.20 -2.64 15 6 C -0.12 -2.88 7.09 31.99 0.23 -2.65 15 7 C 0.10 3.76 6.52 86.86 0.57 4.32 15 8 N -0.65 -31.46 3.04 -803.14 -2.44 -33.90 15 9 C 0.55 33.85 7.56 86.36 0.65 34.50 15 10 O -0.63 -44.30 14.84 -4.32 -0.06 -44.37 15 11 C -0.57 -33.16 8.98 24.83 0.22 -32.94 15 12 H 0.09 4.68 6.64 -2.91 -0.02 4.66 15 13 C 0.03 1.47 5.50 85.31 0.47 1.94 15 14 N -0.82 -51.95 11.83 21.84 0.26 -51.70 15 15 Si 1.00 41.68 29.56 68.60 2.03 43.71 15 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 18 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 19 H 0.25 7.22 7.80 -4.42 -0.03 7.19 15 20 H 0.08 2.10 7.83 -2.39 -0.02 2.09 15 21 H 0.11 2.28 8.14 -2.38 -0.02 2.26 15 22 H 0.12 2.00 8.14 -2.38 -0.02 1.98 15 23 H 0.08 1.91 8.14 -2.39 -0.02 1.90 15 24 H 0.07 2.53 7.14 -2.39 -0.02 2.51 15 25 H 0.05 1.82 8.14 -2.38 -0.02 1.80 15 26 H 0.27 15.64 8.29 -92.71 -0.77 14.87 15 Total: -1.00 -82.01 235.65 5.24 -76.77 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.17 Total: 13.32 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.29 Total: -3.84 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.18 Total: -85.60 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.06 Total: -44.37 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -82.01 5.24 -76.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885269513.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.770 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds