Wall clock time and date at job start Mon Mar 30 2020 02:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48499 * 109.47074 * 240.00378 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47331 * 119.99877 * 3 2 1 7 7 C 1.39745 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.41488 * 120.00140 * 0.27930 * 7 2 1 10 10 C 1.39014 * 126.02424 * 179.71990 * 9 7 2 11 11 N 1.35009 * 106.45876 * 180.02562 * 10 9 7 12 12 C 1.46508 * 126.49594 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47322 * 124.99372 * 12 11 10 14 14 C 1.52996 * 117.50230 * 243.62418 * 13 12 11 15 15 C 1.52998 * 117.49696 * 175.00102 * 13 12 11 16 16 N 1.40127 * 107.01645 * 359.97438 * 11 10 9 17 17 N 1.28667 * 108.93227 * 359.72444 * 16 11 10 18 18 H 0.96996 * 120.00078 * 0.02562 * 1 2 3 19 19 H 1.07997 * 126.76777 * 359.96613 * 10 9 7 20 20 H 1.08997 * 109.46977 * 245.00341 * 12 11 10 21 21 H 1.09004 * 109.46545 * 4.99779 * 12 11 10 22 22 H 1.08998 * 115.54783 * 29.34055 * 13 12 11 23 23 H 1.09005 * 117.49733 * 0.02562 * 14 13 12 24 24 H 1.08996 * 117.49942 * 145.02117 * 14 13 12 25 25 H 1.09004 * 117.50014 * 214.98215 * 15 13 12 26 26 H 1.09004 * 117.49722 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6176 0.0000 4 1 3.0976 1.6963 -1.2125 5 1 1.2789 2.7464 -0.0006 6 1 3.0977 1.6963 1.2125 7 6 2.0085 -1.2103 0.0005 8 1 3.0885 -1.2102 0.0001 9 6 1.3010 -2.4356 -0.0049 10 6 1.8659 -3.7058 -0.0105 11 7 0.8383 -4.5814 -0.0150 12 6 0.9389 -6.0430 -0.0212 13 6 0.1478 -6.6137 1.1576 14 6 0.9298 -7.3702 2.2331 15 6 0.0316 -8.1358 1.2595 16 7 -0.3429 -3.8275 -0.0114 17 7 -0.0400 -2.5770 0.0007 18 1 -0.4850 0.8400 -0.0004 19 1 2.9191 -3.9449 -0.0121 20 1 0.5313 -6.4313 -0.9545 21 1 1.9852 -6.3354 0.0678 22 1 -0.7080 -6.0209 1.4803 23 1 2.0081 -7.4610 2.1012 24 1 0.5887 -7.2751 3.2640 25 1 -0.9005 -8.5444 1.6498 26 1 0.5192 -8.7306 0.4870 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535715891.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:32 Heat of formation + Delta-G solvation = 112.029424 kcal Electronic energy + Delta-G solvation = -11430.476336 eV Core-core repulsion = 9319.067515 eV Total energy + Delta-G solvation = -2111.408822 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.83212 -37.34497 -33.48728 -32.20437 -29.29076 -26.95636 -24.68912 -22.35437 -21.28746 -20.22924 -19.63227 -17.23074 -15.77817 -14.94174 -14.77447 -14.20781 -13.74848 -12.95617 -12.81693 -12.52744 -11.53986 -11.51444 -11.08192 -11.06295 -10.85621 -10.40814 -10.23742 -9.91260 -9.67028 -9.22344 -8.86919 -8.47471 -7.43866 -6.30888 -4.12732 2.91502 3.21757 3.23677 3.25744 3.58879 3.95140 4.18608 4.37765 4.73251 4.96088 5.05742 5.37981 5.59990 5.61204 5.64893 5.79805 5.90273 6.11519 6.18810 6.41593 6.97023 7.17772 7.34689 7.56167 8.19971 8.47277 8.87987 9.14095 10.26509 10.66191 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.092747 B = 0.007976 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.823790 B = 3509.870918 C = 3625.491953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.146 3.854 10 C -0.146 4.146 11 N -0.379 5.379 12 C 0.172 3.828 13 C -0.160 4.160 14 C -0.180 4.180 15 C -0.176 4.176 16 N -0.132 5.132 17 N -0.228 5.228 18 H 0.272 0.728 19 H 0.155 0.845 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.117 0.883 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -10.059 1.571 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.016 3.984 10 C -0.296 4.296 11 N -0.175 5.175 12 C 0.048 3.952 13 C -0.179 4.179 14 C -0.217 4.217 15 C -0.214 4.214 16 N -0.109 5.109 17 N -0.101 5.101 18 H 0.082 0.918 19 H 0.173 0.827 20 H 0.095 0.905 21 H 0.101 0.899 22 H 0.135 0.865 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.530 -9.984 1.565 10.221 hybrid contribution 1.660 0.634 0.035 1.778 sum 3.190 -9.350 1.600 10.008 Atomic orbital electron populations 1.70008 1.06776 1.27814 1.35956 1.25774 0.94812 1.00460 0.93503 0.86399 0.79768 0.81114 0.79370 1.19388 1.20650 1.19378 1.18479 0.93480 0.88076 1.49266 0.90257 1.19238 0.87736 0.92261 0.99151 1.22926 0.93038 0.90374 1.23309 1.49528 1.06829 1.05233 1.55877 1.20906 0.99771 0.77249 0.97295 1.22657 1.02628 0.94040 0.98553 1.23041 0.98120 1.04537 0.95958 1.22940 1.01904 0.93853 1.02694 1.81441 1.05856 0.98532 1.25108 1.75086 1.14375 1.05379 1.15252 0.91757 0.82727 0.90528 0.89907 0.86521 0.88781 0.88900 0.88714 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.68 11.92 55.54 0.66 -22.01 15 2 C 0.07 2.00 5.49 -17.35 -0.10 1.91 15 3 Si 0.91 20.02 29.56 -169.99 -5.02 15.00 15 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.46 -12.89 9.38 -37.78 -0.35 -13.24 15 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 15 9 C 0.15 4.18 6.72 -85.02 -0.57 3.61 15 10 C -0.15 -3.55 11.61 -15.87 -0.18 -3.74 15 11 N -0.38 -8.58 3.69 -60.35 -0.22 -8.81 15 12 C 0.17 2.80 6.82 -4.04 -0.03 2.77 15 13 C -0.16 -2.38 5.93 -90.62 -0.54 -2.92 15 14 C -0.18 -2.20 10.18 -26.73 -0.27 -2.48 15 15 C -0.18 -1.97 10.25 -26.73 -0.27 -2.25 15 16 N -0.13 -3.54 13.43 60.35 0.81 -2.73 15 17 N -0.23 -6.84 10.56 32.05 0.34 -6.50 15 18 H 0.27 7.26 8.30 -40.82 -0.34 6.92 15 19 H 0.16 3.19 8.06 -52.49 -0.42 2.76 15 20 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 21 H 0.08 1.14 7.81 -51.93 -0.41 0.73 15 22 H 0.12 2.06 7.93 -51.93 -0.41 1.64 15 23 H 0.09 1.06 8.03 -51.93 -0.42 0.64 15 24 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 237.40 15.07 3.58 3.58 Total: -1.00 -32.43 237.40 -5.07 -37.50 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -2.89 Total: 0.31 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.32 Total: -16.33 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.59 Total: -40.06 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.43 -5.07 -37.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535715891.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.532 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds