Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30984 * 1 3 3 Si 1.86794 * 120.00339 * 2 1 4 4 H 1.48499 * 109.47074 * 240.00378 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47331 * 119.99877 * 3 2 1 7 7 C 1.39745 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.41488 * 120.00140 * 0.27930 * 7 2 1 10 10 C 1.39014 * 126.02424 * 179.71990 * 9 7 2 11 11 N 1.35009 * 106.45876 * 180.02562 * 10 9 7 12 12 C 1.46508 * 126.49594 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47322 * 124.99372 * 12 11 10 14 14 C 1.52996 * 117.50230 * 243.62418 * 13 12 11 15 15 C 1.52998 * 117.49696 * 175.00102 * 13 12 11 16 16 N 1.40127 * 107.01645 * 359.97438 * 11 10 9 17 17 N 1.28667 * 108.93227 * 359.72444 * 16 11 10 18 18 H 0.96996 * 120.00078 * 0.02562 * 1 2 3 19 19 H 1.07997 * 126.76777 * 359.96613 * 10 9 7 20 20 H 1.08997 * 109.46977 * 245.00341 * 12 11 10 21 21 H 1.09004 * 109.46545 * 4.99779 * 12 11 10 22 22 H 1.08998 * 115.54783 * 29.34055 * 13 12 11 23 23 H 1.09005 * 117.49733 * 0.02562 * 14 13 12 24 24 H 1.08996 * 117.49942 * 145.02117 * 14 13 12 25 25 H 1.09004 * 117.50014 * 214.98215 * 15 13 12 26 26 H 1.09004 * 117.49722 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2439 1.6176 0.0000 4 1 3.0976 1.6963 -1.2125 5 1 1.2789 2.7464 -0.0006 6 1 3.0977 1.6963 1.2125 7 6 2.0085 -1.2103 0.0005 8 1 3.0885 -1.2102 0.0001 9 6 1.3010 -2.4356 -0.0049 10 6 1.8659 -3.7058 -0.0105 11 7 0.8383 -4.5814 -0.0150 12 6 0.9389 -6.0430 -0.0212 13 6 0.1478 -6.6137 1.1576 14 6 0.9298 -7.3702 2.2331 15 6 0.0316 -8.1358 1.2595 16 7 -0.3429 -3.8275 -0.0114 17 7 -0.0400 -2.5770 0.0007 18 1 -0.4850 0.8400 -0.0004 19 1 2.9191 -3.9449 -0.0121 20 1 0.5313 -6.4313 -0.9545 21 1 1.9852 -6.3354 0.0678 22 1 -0.7080 -6.0209 1.4803 23 1 2.0081 -7.4610 2.1012 24 1 0.5887 -7.2751 3.2640 25 1 -0.9005 -8.5444 1.6498 26 1 0.5192 -8.7306 0.4870 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535715891.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = 90.057356 kcal Electronic energy + Delta-G solvation = -11431.429117 eV Core-core repulsion = 9319.067515 eV Total energy + Delta-G solvation = -2112.361602 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.77234 -38.47562 -35.41789 -33.99587 -31.30656 -28.54801 -26.66910 -23.28930 -22.86550 -22.12694 -21.23369 -19.06918 -17.34761 -16.75678 -16.32696 -15.62840 -15.14968 -14.80687 -14.56833 -14.06779 -13.08431 -12.85418 -12.81825 -12.59155 -12.36252 -12.06534 -11.66455 -11.43026 -11.15545 -11.00379 -10.82425 -10.35106 -9.47576 -8.29841 -6.22021 1.02142 1.45330 1.48425 1.58677 2.00326 2.34121 2.35447 2.88222 3.52969 3.58643 3.92123 4.03938 4.17785 4.36818 4.47427 4.61506 4.76540 4.97738 4.99382 5.17872 5.21058 5.24430 5.43898 5.54644 6.38046 6.43104 6.87035 7.08498 8.27188 8.69866 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.092747 B = 0.007976 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.823790 B = 3509.870918 C = 3625.491953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.019 3.981 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.117 4.117 11 N -0.358 5.358 12 C 0.159 3.841 13 C -0.194 4.194 14 C -0.173 4.173 15 C -0.145 4.145 16 N -0.166 5.166 17 N -0.284 5.284 18 H 0.273 0.727 19 H 0.199 0.801 20 H 0.093 0.907 21 H 0.120 0.880 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 -11.636 1.610 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.195 4.195 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.526 4.526 8 H 0.112 0.888 9 C -0.034 4.034 10 C -0.270 4.270 11 N -0.153 5.153 12 C 0.038 3.962 13 C -0.213 4.213 14 C -0.210 4.210 15 C -0.183 4.183 16 N -0.143 5.143 17 N -0.154 5.154 18 H 0.083 0.917 19 H 0.215 0.785 20 H 0.111 0.889 21 H 0.138 0.862 22 H 0.097 0.903 23 H 0.130 0.870 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.678 -11.634 1.605 12.306 hybrid contribution 1.035 0.844 0.035 1.335 sum 4.713 -10.790 1.640 11.888 Atomic orbital electron populations 1.70181 1.08893 1.28811 1.37916 1.26816 0.95603 1.04539 0.92493 0.85136 0.78163 0.75539 0.79936 1.18212 1.20416 1.18241 1.18949 0.94334 0.88889 1.50448 0.88800 1.19879 0.88035 0.94386 1.01109 1.23584 0.94938 0.89386 1.19120 1.50017 1.05504 1.07678 1.52083 1.21497 1.02545 0.73283 0.98838 1.22423 1.02609 0.96462 0.99814 1.23178 0.99158 1.03118 0.95568 1.23078 1.02154 0.90824 1.02210 1.81320 1.07393 0.98248 1.27327 1.75053 1.15681 1.06890 1.17781 0.91721 0.78451 0.88922 0.86209 0.90282 0.87014 0.88933 0.87781 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.22 11.92 21.80 0.26 -49.96 15 2 C 0.02 1.06 5.49 85.18 0.47 1.53 15 3 Si 0.99 41.49 29.56 68.60 2.03 43.51 15 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 7 C -0.49 -27.93 9.38 23.44 0.22 -27.71 15 8 H 0.09 4.83 7.84 -2.91 -0.02 4.81 15 9 C 0.10 5.72 6.72 39.67 0.27 5.99 15 10 C -0.12 -5.50 11.61 84.39 0.98 -4.52 15 11 N -0.36 -15.87 3.69 -344.84 -1.27 -17.14 15 12 C 0.16 4.76 6.82 86.38 0.59 5.34 15 13 C -0.19 -5.44 5.93 -10.80 -0.06 -5.50 15 14 C -0.17 -3.70 10.18 30.59 0.31 -3.39 15 15 C -0.15 -2.73 10.25 30.59 0.31 -2.41 15 16 N -0.17 -9.17 13.43 37.02 0.50 -8.67 15 17 N -0.28 -17.69 10.56 -52.52 -0.55 -18.24 15 18 H 0.27 15.21 8.30 -92.71 -0.77 14.44 15 19 H 0.20 7.37 8.06 -2.91 -0.02 7.34 15 20 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 21 H 0.12 2.71 7.81 -2.39 -0.02 2.69 15 22 H 0.08 2.84 7.93 -2.39 -0.02 2.83 15 23 H 0.11 2.01 8.03 -2.38 -0.02 1.99 15 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 25 H 0.10 1.79 8.14 -2.38 -0.02 1.77 15 26 H 0.12 1.68 8.14 -2.38 -0.02 1.66 15 Total: -1.00 -74.12 237.40 5.21 -68.91 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.17 Total: 12.25 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.08 Total: -30.67 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -1.07 Total: -94.01 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -74.12 5.21 -68.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535715891.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.969 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds