Wall clock time and date at job start Mon Mar 30 2020 01:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31887 * 119.62019 * 2 1 4 4 C 1.31858 * 121.72723 * 180.31479 * 3 2 1 5 5 C 1.38225 * 120.76248 * 359.69832 * 4 3 2 6 6 C 1.38637 * 119.16209 * 359.97438 * 5 4 3 7 7 C 1.38185 * 119.61707 * 179.72491 * 2 1 3 8 8 C 1.50699 * 120.41815 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.46959 * 324.72173 * 8 7 2 10 10 O 1.42898 * 109.46964 * 204.72203 * 8 7 2 11 11 C 1.50703 * 109.47227 * 84.72175 * 8 7 2 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99873 * 180.02562 * 11 8 7 14 14 N 1.31524 * 119.99673 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00328 * 0.02562 * 13 11 8 16 16 H 1.48494 * 109.47102 * 89.99993 * 15 13 11 17 17 H 1.48497 * 109.46938 * 210.00285 * 15 13 11 18 18 H 1.48503 * 109.46783 * 329.99706 * 15 13 11 19 19 H 1.09001 * 109.47267 * 270.27416 * 1 2 3 20 20 H 1.09000 * 109.47027 * 30.26928 * 1 2 3 21 21 H 1.09001 * 109.46787 * 150.27418 * 1 2 3 22 22 H 1.07998 * 119.62106 * 179.72357 * 4 3 2 23 23 H 1.07997 * 120.41818 * 180.02562 * 5 4 3 24 24 H 1.07996 * 120.78903 * 180.02562 * 6 5 4 25 25 H 0.96698 * 113.99898 * 299.99550 * 10 8 7 26 26 H 0.97001 * 119.99784 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0062 5 6 4.2267 0.0341 -0.0066 6 6 3.5765 -1.1904 0.0000 7 6 2.1899 -1.2013 0.0058 8 6 1.4372 -2.5068 0.0126 9 1 0.5291 -2.3996 0.6060 10 8 2.2597 -3.5279 0.5809 11 6 1.0725 -2.8839 -1.4002 12 1 1.3577 -2.2424 -2.2210 13 6 0.3748 -4.0476 -1.6448 14 7 0.0570 -4.3769 -2.8779 15 14 -0.1190 -5.1566 -0.2251 16 1 -1.4573 -4.7529 0.2760 17 1 -0.1695 -6.5654 -0.6920 18 1 0.8773 -5.0332 0.8691 19 1 -0.3634 0.0049 1.0276 20 1 -0.3633 0.8876 -0.5180 21 1 -0.3633 -0.8925 -0.5096 22 1 3.9754 2.1528 -0.0105 23 1 5.3056 0.0803 -0.0113 24 1 4.1367 -2.1137 0.0002 25 1 3.0869 -3.6779 0.1030 26 1 -0.4342 -5.1954 -3.0500 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535722833.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:20 Heat of formation + Delta-G solvation = -42.265876 kcal Electronic energy + Delta-G solvation = -11909.237145 eV Core-core repulsion = 9758.844826 eV Total energy + Delta-G solvation = -2150.392319 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.23196 -37.96557 -34.54569 -33.90628 -33.15406 -29.39141 -28.35692 -25.28857 -23.04336 -22.22524 -19.53280 -17.84854 -17.45945 -16.79402 -16.55071 -15.35278 -15.16151 -14.95938 -14.64083 -13.87899 -13.84162 -13.29276 -13.15678 -12.98966 -12.96458 -12.63027 -11.87303 -11.33749 -10.88569 -10.65076 -10.49779 -10.13999 -9.51564 -8.36391 -6.52684 0.29390 0.46151 1.40930 1.46653 1.74801 2.42345 2.92303 3.00247 3.52760 3.95192 3.97316 4.06304 4.18100 4.32879 4.68290 4.75740 4.78141 4.87009 5.10791 5.26431 5.33037 5.40600 5.59607 5.91750 6.07660 6.58881 7.06633 7.13734 7.28098 8.77426 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.050221 B = 0.012677 C = 0.011856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.399042 B = 2208.265410 C = 2361.181838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.106 3.894 3 N -0.509 5.509 4 C 0.074 3.926 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.146 4.146 8 C 0.241 3.759 9 H 0.069 0.931 10 O -0.577 6.577 11 C -0.549 4.549 12 H 0.029 0.971 13 C 0.034 3.966 14 N -0.935 5.935 15 Si 0.934 3.066 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.205 1.205 19 H 0.088 0.912 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.185 0.815 23 H 0.169 0.831 24 H 0.146 0.854 25 H 0.369 0.631 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 6.106 7.749 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.030 4.030 3 N -0.219 5.219 4 C -0.083 4.083 5 C -0.191 4.191 6 C -0.111 4.111 7 C -0.148 4.148 8 C 0.182 3.818 9 H 0.087 0.913 10 O -0.385 6.385 11 C -0.587 4.587 12 H 0.048 0.952 13 C -0.167 4.167 14 N -0.574 5.574 15 Si 0.758 3.242 16 H -0.206 1.206 17 H -0.222 1.222 18 H -0.127 1.127 19 H 0.106 0.894 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.202 0.798 23 H 0.186 0.814 24 H 0.164 0.836 25 H 0.218 0.782 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.317 6.743 8.075 11.787 hybrid contribution 0.408 -1.340 -0.610 1.527 sum 5.724 5.403 7.465 10.849 Atomic orbital electron populations 1.20758 0.88760 1.03523 1.03283 1.21241 0.97732 0.87978 0.96076 1.67489 1.11521 1.29114 1.13811 1.23251 0.89012 1.00009 0.96027 1.22404 1.02812 0.92318 1.01565 1.21662 0.93390 1.00011 0.96035 1.21660 0.96130 0.97548 0.99503 1.18514 0.89416 0.81547 0.92287 0.91342 1.86654 1.35525 1.58403 1.57927 1.21440 1.37544 1.07461 0.92236 0.95242 1.25829 0.93822 0.98889 0.98118 1.70074 1.39728 1.25546 1.22042 0.86045 0.79596 0.76683 0.81899 1.20580 1.22236 1.12707 0.89401 0.90477 0.91003 0.79773 0.81368 0.83590 0.78193 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.89 9.39 71.23 0.67 -3.22 15 2 C 0.11 4.23 6.78 42.54 0.29 4.52 15 3 N -0.51 -18.62 10.27 -183.89 -1.89 -20.51 15 4 C 0.07 2.18 11.18 84.69 0.95 3.12 15 5 C -0.17 -4.75 10.11 22.36 0.23 -4.53 15 6 C -0.09 -2.89 9.41 22.47 0.21 -2.68 15 7 C -0.15 -5.96 5.02 -19.77 -0.10 -6.06 15 8 C 0.24 10.90 1.87 29.10 0.05 10.96 15 9 H 0.07 3.13 6.45 -2.39 -0.02 3.12 15 10 O -0.58 -24.31 9.81 -148.98 -1.46 -25.78 15 11 C -0.55 -30.08 8.53 25.60 0.22 -29.86 15 12 H 0.03 1.83 7.98 -2.91 -0.02 1.81 15 13 C 0.03 1.90 5.47 84.65 0.46 2.36 15 14 N -0.94 -56.86 13.96 21.45 0.30 -56.56 15 15 Si 0.93 43.38 26.99 68.60 1.85 45.23 15 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 17 H -0.30 -13.75 7.11 99.48 0.71 -13.04 15 18 H -0.21 -9.04 5.31 99.48 0.53 -8.51 15 19 H 0.09 2.78 8.14 -2.39 -0.02 2.76 15 20 H 0.08 2.61 8.14 -2.39 -0.02 2.59 15 21 H 0.07 2.97 6.14 -2.39 -0.01 2.96 15 22 H 0.19 3.82 8.06 -2.91 -0.02 3.80 15 23 H 0.17 3.17 8.06 -2.91 -0.02 3.15 15 24 H 0.15 4.30 6.53 -2.91 -0.02 4.28 15 25 H 0.37 13.45 7.38 -74.06 -0.55 12.91 15 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 Total: -1.00 -66.90 223.51 2.24 -64.65 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.47 Total: 18.35 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 2.98 Total: -25.38 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.59 Total: -77.08 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.46 Total: -25.78 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.85 Total: 45.23 kcal Total: -66.90 2.24 -64.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535722833.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.389 kcal (2) G-P(sol) polarization free energy of solvation -66.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds