Wall clock time and date at job start Mon Mar 30 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38225 * 120.41904 * 2 1 4 4 N 1.31847 * 120.76447 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72615 * 359.97438 * 4 3 2 6 6 C 1.38185 * 120.76240 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.41381 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.46707 * 159.99963 * 7 6 5 9 9 O 1.42902 * 109.47123 * 40.00354 * 7 6 5 10 10 C 1.50697 * 109.47339 * 279.99929 * 7 6 5 11 11 H 1.08005 * 119.99546 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99985 * 180.02562 * 10 7 6 13 13 N 1.31511 * 120.00319 * 359.97438 * 12 10 7 14 14 Si 1.86807 * 120.00024 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.46991 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47239 * 119.99547 * 14 12 10 17 17 H 1.48497 * 109.46900 * 239.99738 * 14 12 10 18 18 C 1.38627 * 120.41932 * 180.02562 * 2 1 3 19 19 H 1.09002 * 109.46856 * 269.97137 * 1 2 3 20 20 H 1.08997 * 109.47345 * 29.97125 * 1 2 3 21 21 H 1.09007 * 109.46897 * 149.97807 * 1 2 3 22 22 H 1.07996 * 119.61319 * 0.05090 * 3 2 1 23 23 H 1.07996 * 119.61758 * 180.28019 * 5 4 3 24 24 H 0.96696 * 113.99518 * 299.99705 * 9 7 6 25 25 H 0.96996 * 120.00381 * 180.02562 * 13 12 10 26 26 H 1.08007 * 120.79013 * 359.95066 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0005 6 6 3.5948 -1.1471 -0.0005 7 6 4.4027 -2.4193 -0.0012 8 1 3.7825 -3.2437 0.3504 9 8 5.5296 -2.2683 0.8645 10 6 4.8798 -2.7108 -1.4006 11 1 4.6238 -2.0415 -2.2087 12 6 5.6429 -3.8318 -1.6493 13 7 5.9549 -4.6465 -0.6652 14 14 6.2348 -4.1928 -3.3839 15 1 5.7524 -3.1304 -4.3027 16 1 7.7192 -4.2279 -3.4032 17 1 5.7027 -5.5071 -3.8250 18 6 2.2090 -1.1954 -0.0005 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3633 -0.8899 -0.5142 22 1 1.6675 2.1276 0.0008 23 1 5.3046 0.1285 0.0036 24 1 6.1266 -1.5510 0.6113 25 1 6.4921 -5.4349 -0.8401 26 1 1.6888 -2.1420 -0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535854792.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:19 Heat of formation + Delta-G solvation = -29.027046 kcal Electronic energy + Delta-G solvation = -11628.631049 eV Core-core repulsion = 9478.812808 eV Total energy + Delta-G solvation = -2149.818240 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.67907 -35.84186 -33.10864 -32.23826 -31.36355 -26.86972 -26.80867 -23.50914 -22.44799 -20.14783 -17.12812 -16.50061 -15.91256 -14.98562 -14.65329 -13.85477 -13.48837 -12.91127 -12.71987 -12.43328 -12.41831 -12.25173 -11.50997 -11.24388 -11.03660 -10.95764 -10.26748 -9.64041 -9.09123 -8.80529 -8.67985 -8.37923 -8.04332 -6.11013 -4.30955 1.70562 1.92249 3.22319 3.30919 3.35365 4.28271 4.43995 4.97717 5.13456 5.21396 5.28845 5.52211 5.66942 5.73220 5.92641 6.00752 6.21761 6.25875 6.41135 6.73248 6.83597 7.33265 7.57567 7.73680 8.00731 8.53550 8.72015 9.21958 9.45420 10.92447 Molecular weight = 193.08amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.010314 C = 0.009916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.098763 B = 2714.206566 C = 2823.177047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.144 4.144 3 C 0.066 3.934 4 N -0.487 5.487 5 C 0.090 3.910 6 C -0.111 4.111 7 C 0.262 3.738 8 H 0.069 0.931 9 O -0.559 6.559 10 C -0.566 4.566 11 H 0.058 0.942 12 C 0.081 3.919 13 N -0.857 5.857 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.282 1.282 18 C -0.082 4.082 19 H 0.066 0.934 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.143 0.857 23 H 0.150 0.850 24 H 0.347 0.653 25 H 0.262 0.738 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 6.501 0.427 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.146 4.146 3 C -0.091 4.091 4 N -0.195 5.195 5 C -0.067 4.067 6 C -0.114 4.114 7 C 0.204 3.796 8 H 0.087 0.913 9 O -0.362 6.362 10 C -0.604 4.604 11 H 0.077 0.923 12 C -0.126 4.126 13 N -0.493 5.493 14 Si 0.720 3.280 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.108 4.108 19 H 0.085 0.915 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.160 0.840 23 H 0.167 0.833 24 H 0.192 0.808 25 H 0.072 0.928 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.872 6.627 0.796 9.580 hybrid contribution 0.105 -0.656 -1.341 1.497 sum -6.767 5.971 -0.545 9.041 Atomic orbital electron populations 1.20655 0.91018 1.02527 1.01957 1.20826 0.96921 0.94499 1.02391 1.22367 0.90227 0.96789 0.99754 1.67567 1.08204 1.31749 1.11942 1.22431 1.00093 0.87269 0.96864 1.22405 0.95146 0.99750 0.94064 1.18466 0.83561 0.87099 0.90453 0.91342 1.86625 1.37823 1.56644 1.55087 1.21548 1.35517 1.09809 0.93537 0.92348 1.25046 0.95138 0.95415 0.97013 1.70076 1.35507 1.12737 1.30942 0.86534 0.78666 0.78340 0.84426 1.19621 1.20670 1.20749 1.21343 0.93927 0.97670 0.97884 0.91480 0.91755 0.91611 0.83967 0.83257 0.80818 0.92769 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.04 36.01 0.36 -0.88 15 2 C -0.14 -2.36 5.90 -104.48 -0.62 -2.97 15 3 C 0.07 1.11 10.86 -17.55 -0.19 0.92 15 4 N -0.49 -9.42 10.36 -13.25 -0.14 -9.56 15 5 C 0.09 1.83 10.49 -17.55 -0.18 1.65 15 6 C -0.11 -2.40 4.92 -104.48 -0.51 -2.92 15 7 C 0.26 6.57 3.08 -29.03 -0.09 6.48 15 8 H 0.07 1.84 8.03 -51.93 -0.42 1.43 15 9 O -0.56 -14.16 12.59 -35.23 -0.44 -14.61 15 10 C -0.57 -15.29 8.74 -34.44 -0.30 -15.59 15 11 H 0.06 1.59 7.74 -52.48 -0.41 1.18 15 12 C 0.08 2.21 5.40 -17.82 -0.10 2.11 15 13 N -0.86 -24.72 12.84 55.43 0.71 -24.01 15 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 15 15 H -0.27 -6.31 7.11 56.52 0.40 -5.90 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 C -0.08 -1.56 9.51 -39.28 -0.37 -1.94 15 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.06 0.65 8.09 -51.93 -0.42 0.23 15 21 H 0.06 0.74 8.10 -51.93 -0.42 0.32 15 22 H 0.14 1.91 8.06 -52.49 -0.42 1.49 15 23 H 0.15 2.84 6.80 -52.49 -0.36 2.49 15 24 H 0.35 7.68 7.52 45.56 0.34 8.02 15 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 26 H 0.13 2.26 8.06 -52.48 -0.42 1.84 15 LS Contribution 234.43 15.07 3.53 3.53 Total: -1.00 -30.51 234.43 -5.44 -35.95 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -2.08 Total: 5.97 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.00 Total: -13.13 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.57 Total: -33.57 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.44 Total: -14.61 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.51 -5.44 -35.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535854792.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.922 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds